Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69432 | Canola | nucleus | 90.55 | 97.12 |
| Bra008604.1-P | Field mustard | nucleus | 83.27 | 96.59 |
| AT5G16690.1 | Thale cress | nucleus | 80.08 | 85.42 |
| VIT_16s0039g01440.t01 | Wine grape | cytosol | 17.11 | 54.92 |
| VIT_16s0039g01430.t01 | Wine grape | nucleus | 23.24 | 49.06 |
| KRH23980 | Soybean | plastid | 45.21 | 48.1 |
| Solyc12g013880.1.1 | Tomato | nucleus | 40.1 | 47.43 |
| PGSC0003DMT400039753 | Potato | cytosol | 21.71 | 47.09 |
| GSMUA_Achr2P17940_001 | Banana | nucleus | 36.65 | 45.2 |
| PGSC0003DMT400039751 | Potato | nucleus | 18.77 | 44.68 |
| TraesCS7B01G120800.1 | Wheat | plastid | 40.36 | 43.89 |
| TraesCS7A01G213600.1 | Wheat | plastid | 40.1 | 43.67 |
| HORVU2Hr1G029330.11 | Barley | plastid | 39.85 | 43.33 |
| TraesCS7D01G215600.1 | Wheat | plastid | 39.59 | 43.06 |
| Os10t0402200-01 | Rice | nucleus, plastid | 39.21 | 42.76 |
| EES17403 | Sorghum | plastid | 39.08 | 42.74 |
| Zm00001d031073_P001 | Maize | plastid | 15.33 | 39.34 |
Protein Annotations
| MapMan:13.2.1.1.3 | GO:A0A078II72 | UniProt:A0A078II72 | EnsemblPlants:CDY49642 | ProteinID:CDY49642 | ProteinID:CDY49642.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005664 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0006260 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00093510001 |
| InterPro:ORC3 | PFAM:PF07034 | PANTHER:PTHR12748 | UniParc:UPI0004EE2A67 | SEG:seg | : |
Description
BnaC09g41200DBnaC09g41200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078II72]
Coordinates
chrLK032850:-:1571..6799
Molecular Weight (calculated)
87472.7 Da
IEP (calculated)
8.557
GRAVY (calculated)
-0.129
Length
783 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPSTSVADP QPSSTTDSFN SNAAAENDIR PFFVLHKASS GSKPTATVKA KRRIESPSPK LAKKSEIESV EEEDGQFFST LRLKVFETVW SKIENTIQDV
101: LRDSNSKVFS GVHNWICESF ESVRSSGALS LSEAVRSYPV LSQPSSKQLF TALVLTRNLE MVDDLSTFED LGLHLKSQGC HVAKLSSMDF SAKNGVGGCL
201: RGLLRQFVMP TIDVADVTVL ASWYRENGNH KNPVVIIVDD TERCSGSVLS DLILILSEWA VKVPIFLIMG VSTAHDAPRK ILSANALQRL CASRFTLSSP
301: AERMDAVLEA VFLKPCSGFT VSHKVALFMR SYFLCQDGTL TSFVKTLKIA CLQHFSLEPL SIMLEHFCQD NQLPGEGTGL LTEATMKHAF DLPSVTRNKI
401: TRSTCEMLPQ FLLDLQRMPN PWSIVVLCIY EAGKFDKLRL LDIFCETLDP EARYLKYFAP SAILNSQSHV SGRNSVIRRV LRKLSFSSVQ MASLSTYFLL
501: PNLFNKILRI SLVNHVRSVS EVLLSRVSKP ENDCVVESVD LSPAQLSSLL KSWESLTAEF SEINEKVMEL HPFMRNVEAA GQRPGLPTSP KKHASRSHSK
601: LEKELKAMTD KISAVIEFML REYMKPVETV PFNEILCFKN VDKLQSALLG DPRGRIQSDL LESHSILNCL CCSQRGTTLL PSMHDTSILY ALAQEHADVI
701: NLHDWYQSFK TILIPRNSKA KSKSKTTSKS KKRKERCEEP EPPAEASIQA RFCRAVMELQ IAGLIRMPSK RRPDFVQRVA FSS
101: LRDSNSKVFS GVHNWICESF ESVRSSGALS LSEAVRSYPV LSQPSSKQLF TALVLTRNLE MVDDLSTFED LGLHLKSQGC HVAKLSSMDF SAKNGVGGCL
201: RGLLRQFVMP TIDVADVTVL ASWYRENGNH KNPVVIIVDD TERCSGSVLS DLILILSEWA VKVPIFLIMG VSTAHDAPRK ILSANALQRL CASRFTLSSP
301: AERMDAVLEA VFLKPCSGFT VSHKVALFMR SYFLCQDGTL TSFVKTLKIA CLQHFSLEPL SIMLEHFCQD NQLPGEGTGL LTEATMKHAF DLPSVTRNKI
401: TRSTCEMLPQ FLLDLQRMPN PWSIVVLCIY EAGKFDKLRL LDIFCETLDP EARYLKYFAP SAILNSQSHV SGRNSVIRRV LRKLSFSSVQ MASLSTYFLL
501: PNLFNKILRI SLVNHVRSVS EVLLSRVSKP ENDCVVESVD LSPAQLSSLL KSWESLTAEF SEINEKVMEL HPFMRNVEAA GQRPGLPTSP KKHASRSHSK
601: LEKELKAMTD KISAVIEFML REYMKPVETV PFNEILCFKN VDKLQSALLG DPRGRIQSDL LESHSILNCL CCSQRGTTLL PSMHDTSILY ALAQEHADVI
701: NLHDWYQSFK TILIPRNSKA KSKSKTTSKS KKRKERCEEP EPPAEASIQA RFCRAVMELQ IAGLIRMPSK RRPDFVQRVA FSS
001: MAPSGTVADP PQCSTTDSFN SSDTAENDIR PFFVLHKASS GNHNGKLTGI VKSKRRIESP SPKIAKRSEV ESVEEEDGQF FSTLRFKVFE TVWSKIEKTI
101: EDVLRNSNSK VFSGIHDWIR ESFESIISSG ALKLSEAVRS YPVLTQASSK QLLTAMVLTR NLEMVDDLLT FEELELHLKS QGCHVAKLSS MDFSAKSGVG
201: GCLRGLLRQF VMPTVDVADV TILASWYREN KNHENPVVII VDDTERCCGP VLSDLILILS EWAIKVPIFL IMGVSTAHDA PRKILSVNAL QRLCATRFTL
301: SSPAERMDAV LKAVFLKPCS GFTVSHKVAL FMRSYFLCQD GTLTSFVRTL KIACLQHFSL EPLSIMLEHF CHDGVNQLSG EGTELLTEAT MKHAFDLPSV
401: TRNKITRSTF EMLPHFLLDL QRMPNPWSIV VLCLYEAGKF DKLRLLDIFC EILDPEARYL KYFSPSEIVN SQSHNSGRNN VIRRVLRKLR DLSPSQLSSM
501: LKSWENLTAE FTEINDKVIE LHPFMRAVEA AGQRQGLPNS PKKHASRSNS KLEKELKAMT DKVATVIEFM LREYMKPVES VPFHEILCFK NVDKLQSALL
601: GDPRGRIQLD LLESHDILHC VCCSQRGTTL LPSMHDTSIL YKLAQEHADV INLHDWYQSF KTILIPRSSK AKQKSKSSSK SKKRKEICEE PEAPAEALIQ
701: ARFCRAVMEL QITGLIRMPS KRRPDFVQRV AFGS
101: EDVLRNSNSK VFSGIHDWIR ESFESIISSG ALKLSEAVRS YPVLTQASSK QLLTAMVLTR NLEMVDDLLT FEELELHLKS QGCHVAKLSS MDFSAKSGVG
201: GCLRGLLRQF VMPTVDVADV TILASWYREN KNHENPVVII VDDTERCCGP VLSDLILILS EWAIKVPIFL IMGVSTAHDA PRKILSVNAL QRLCATRFTL
301: SSPAERMDAV LKAVFLKPCS GFTVSHKVAL FMRSYFLCQD GTLTSFVRTL KIACLQHFSL EPLSIMLEHF CHDGVNQLSG EGTELLTEAT MKHAFDLPSV
401: TRNKITRSTF EMLPHFLLDL QRMPNPWSIV VLCLYEAGKF DKLRLLDIFC EILDPEARYL KYFSPSEIVN SQSHNSGRNN VIRRVLRKLR DLSPSQLSSM
501: LKSWENLTAE FTEINDKVIE LHPFMRAVEA AGQRQGLPNS PKKHASRSNS KLEKELKAMT DKVATVIEFM LREYMKPVES VPFHEILCFK NVDKLQSALL
601: GDPRGRIQLD LLESHDILHC VCCSQRGTTL LPSMHDTSIL YKLAQEHADV INLHDWYQSF KTILIPRSSK AKQKSKSSSK SKKRKEICEE PEAPAEALIQ
701: ARFCRAVMEL QITGLIRMPS KRRPDFVQRV AFGS
Arabidopsis Description
ORC3ORC3 [Source:UniProtKB/TrEMBL;Acc:A0A178UNG9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.