CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92739
EER93232
EER99752
EES02793
EES03772
EES18429
KXG24389

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16690.1	EER99752	AT1G26840.1	16179646
AT5G16690.1	EES02793	AT2G26760.1	20706207
AT5G16690.1	EES03772	AT2G26760.1	20706207
AT5G16690.1	EES18429	AT2G26760.1	20706207
AT5G16690.1	KXG24389	AT2G26760.1	20706207
AT5G16690.1	EER92739	AT2G37560.1	16179646
AT5G16690.1	EER93232	AT2G37560.1	16179646

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031073_P001	Maize	plastid	37.15	87.21
TraesCS7B01G120800.1	Wheat	plastid	74.44	74.03
HORVU2Hr1G029330.11	Barley	plastid	74.02	73.61
TraesCS7D01G215600.1	Wheat	plastid	73.88	73.47
TraesCS7A01G213600.1	Wheat	plastid	73.74	73.44
Os10t0402200-01	Rice	nucleus, plastid	72.07	71.87
GSMUA_Achr2P17940_001	Banana	nucleus	47.49	53.54
VIT_16s0039g01430.t01	Wine grape	nucleus	23.04	44.47
Bra008604.1-P	Field mustard	nucleus	41.34	43.85
VIT_16s0039g01440.t01	Wine grape	cytosol	14.8	43.44
KRH23980	Soybean	plastid	43.85	42.66
PGSC0003DMT400039751	Potato	nucleus	19.55	42.55
Solyc12g013880.1.1	Tomato	nucleus	39.11	42.3
CDX69432	Canola	nucleus	43.02	42.19
AT5G16690.1	Thale cress	nucleus	43.16	42.1
PGSC0003DMT400039753	Potato	cytosol	20.81	41.27
CDY49642	Canola	nucleus	42.74	39.08

Protein Annotations

MapMan:13.2.1.1.3	Gene3D:3.40.50.300	EntrezGene:8071472	UniProt:C5YS23	EnsemblPlants:EES17403	ProteinID:EES17403
ProteinID:EES17403.1	GO:GO:0000784	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003688
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005656	GO:GO:0005664	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0006267
GO:GO:0006270	GO:GO:0007049	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009744	GO:GO:0009791	GO:GO:0009987	GO:GO:0016043	GO:GO:0031261	GO:GO:0048527
InterPro:ORC3	InterPro:P-loop_NTPase	PFAM:PF07034	PANTHER:PTHR12748	EnsemblPlantsGene:SORBI_3008G171700	SUPFAM:SSF52540
unigene:Sbi.20722	UniParc:UPI0001A88141	RefSeq:XP_002443565.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:-:60545372..60548891

Molecular Weight (calculated)

79748.3 Da

IEP (calculated)

7.404

GRAVY (calculated)

-0.128

Length

716 amino acids

Sequence
(BLAST)

001: MSAPPCDTLP TAANNIQPFL VLHKAAASSV PSSRAKHQIH TSQPSSPNPK SANRCRQPAG EECEDEGDLE LYEQLRVEAF HRTWSKIQST IDEVLRAINL
101: KLFDQVLQWA KESFTSVRAI TEPHRTEVQQ PYPLLTDVIC RRIPTAFVLT KNAEFVDDIT TFHDLAGHMK SNGCHVVKLS AAELSAKHGV GGCFRSLLRQ
201: LLSDVPVVAD VSALASWYCE AGNFDQPIIV IIDDLEQCSG DVLGELVMML SEWVFKIPVF FVMGIATTLD APKKLLSSEA LQRLEPCKLT LGSPSDRLNA
301: LVEAVLVKPC TGFCISHEVA VFLRNYFFRH DGTITSFITA LRLACCKHFS MEPLSFLCIG MLEEDSEEFW RDKFESLPQT IRKYAFDLPS SKNANNSNNS
401: CNMVEGLSRL MKLQKDWSSV LLCLYEAGRQ DKMQLLDIFC EAANPDLQTE NSPDNYLCAS KVTCENLLGV KSGSAKGFIA QVMNTIRYLP TEILLHVLEV
501: WSIHLKGMSE INDRVKELQS TTIGADSVRT KRRSTANTGN GTVLLNDKVA ALLQDVIRKY LVPVECLPFH EIICFKNVDI LQSALIGNPR RMIQLDLLKS
601: QSHLKCSCCS RSGAAVSGSL HDTSIMCNLA QEYGDVINLH DWYTAFEGII KSTNSKGKRK SYSSPSKKKS KPTPLEGEGM IQARFCRAVT EMQITGLLRM
701: PSKRRPDLVQ RITFGP

Best Arabidopsis Sequence Match ( AT5G16690.1 )
(BLAST)

001: MAPSGTVADP PQCSTTDSFN SSDTAENDIR PFFVLHKASS GNHNGKLTGI VKSKRRIESP SPKIAKRSEV ESVEEEDGQF FSTLRFKVFE TVWSKIEKTI
101: EDVLRNSNSK VFSGIHDWIR ESFESIISSG ALKLSEAVRS YPVLTQASSK QLLTAMVLTR NLEMVDDLLT FEELELHLKS QGCHVAKLSS MDFSAKSGVG
201: GCLRGLLRQF VMPTVDVADV TILASWYREN KNHENPVVII VDDTERCCGP VLSDLILILS EWAIKVPIFL IMGVSTAHDA PRKILSVNAL QRLCATRFTL
301: SSPAERMDAV LKAVFLKPCS GFTVSHKVAL FMRSYFLCQD GTLTSFVRTL KIACLQHFSL EPLSIMLEHF CHDGVNQLSG EGTELLTEAT MKHAFDLPSV
401: TRNKITRSTF EMLPHFLLDL QRMPNPWSIV VLCLYEAGKF DKLRLLDIFC EILDPEARYL KYFSPSEIVN SQSHNSGRNN VIRRVLRKLR DLSPSQLSSM
501: LKSWENLTAE FTEINDKVIE LHPFMRAVEA AGQRQGLPNS PKKHASRSNS KLEKELKAMT DKVATVIEFM LREYMKPVES VPFHEILCFK NVDKLQSALL
601: GDPRGRIQLD LLESHDILHC VCCSQRGTTL LPSMHDTSIL YKLAQEHADV INLHDWYQSF KTILIPRSSK AKQKSKSSSK SKKRKEICEE PEAPAEALIQ
701: ARFCRAVMEL QITGLIRMPS KRRPDFVQRV AFGS

Arabidopsis Description

ORC3ORC3 [Source:UniProtKB/TrEMBL;Acc:A0A178UNG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.