CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
nucleus 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90152
EER91871
EER92268
EER94106
EER97682
EES04403
EES05388
EES11052
EES11053
EES11054
EES11600
EES12225
EES13543
EES14672
EES15619
EES19069
KXG26586
KXG26599
KXG26629
KXG26630
KXG27072
KXG29757
KXG33923
KXG35736
KXG40187
KXG40336
OQU80908
OQU81862
OQU85258
OQU87155

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11520.1	EES05388	AT1G05805.1	20706207
AT3G11520.1	KXG26599	AT1G05805.1	20706207
AT3G11520.1	KXG33923	AT1G05805.1	20706207
AT3G11520.1	EER92268	AT1G56110.1	20706207
AT3G11520.1	EER97682	AT1G56110.1	20706207
AT3G11520.1	EES19069	AT3G61650.1	20706207
AT3G11520.1	KXG35736	AT5G06680.1	20706207
AT3G11520.1	EER91871	AT5G46780.1	20706207
AT4G37490.1	EER90152	AT1G20930.1	20706207
AT4G37490.1	OQU80908	AT1G20930.1	20706207
AT4G37490.1	EER90152	AT1G76540.1	20706207
AT4G37490.1	OQU80908	AT1G76540.1	20706207
AT4G37490.1	EES04403	AT3G48750.1	12065421
AT4G37490.1	KXG40336	AT3G48750.1	12065421
AT4G37490.1	EES15619	AT3G54180.1	12065421
AT5G06150.1	EES13543	AT1G04810.1	20706207
AT5G06150.1	KXG27072	AT1G04810.1	20706207
AT5G06150.1	EER90152	AT1G20930.1	20706207
AT5G06150.1	OQU80908	AT1G20930.1	20706207
AT5G06150.1	EER94106	AT1G48920.1	20706207
AT5G06150.1	EES14672	AT1G48920.1	20706207
AT5G06150.1	EES12225	AT1G71380.1	20706207
AT5G06150.1	KXG40187	AT2G27960.1	20706207
AT5G06150.1	KXG40187	AT2G27970.1	20706207
AT5G06150.1	EES11600	AT3G11270.1	20706207
AT5G06150.1	EES15619	AT3G54180.1	20706207
AT5G06150.1	KXG26586	AT4G24820.1	20706207
AT5G06150.1	OQU85258	AT4G24820.1	20706207
AT5G06150.1	EES11052	AT5G25460.1	20706207
AT5G06150.1	EES11053	AT5G25460.1	20706207
AT5G06150.1	EES11054	AT5G25460.1	20706207
AT5G06150.1	KXG26629	AT5G25460.1	20706207
AT5G06150.1	KXG26630	AT5G25460.1	20706207
AT5G06150.1	KXG29757	AT5G25460.1	20706207
AT5G06150.1	OQU81862	AT5G25460.1	20706207
AT5G06150.1	OQU87155	AT5G25460.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010656_P001	Maize	nucleus	77.61	80.04
HORVU0Hr1G001680.1	Barley	nucleus	45.22	65.0
TraesCS1D01G309300.1	Wheat	nucleus, plastid	60.65	63.99
TraesCS1B01G320900.1	Wheat	nucleus, plastid	60.43	63.76
HORVU1Hr1G068010.7	Barley	mitochondrion, nucleus	56.96	62.38
TraesCS1D01G309400.1	Wheat	nucleus	59.13	62.24
TraesCS1A01G309800.1	Wheat	nucleus	58.91	62.16
HORVU1Hr1G068160.2	Barley	nucleus, plastid	59.13	61.4
HORVU0Hr1G026010.1	Barley	nucleus, plastid	59.13	61.4
HORVU1Hr1G068080.1	Barley	plastid	45.43	61.11
HORVU0Hr1G001690.16	Barley	nucleus, peroxisome	58.04	60.96
TraesCS1B01G321000.1	Wheat	nucleus	57.61	60.78
KXG24389	Sorghum	nucleus	30.22	55.16
EES03772	Sorghum	nucleus, plastid	53.48	54.79
Os05t0493500-00	Rice	nucleus	51.96	49.08
KRH66720	Soybean	endoplasmic reticulum, vacuole	21.09	48.74
GSMUA_AchrUn_...	Banana	nucleus	31.09	47.99
PGSC0003DMT400058457	Potato	nucleus	43.48	47.85
CDY69551	Canola	nucleus	36.74	47.61
Solyc01g009040.2.1	Tomato	nucleus	44.57	47.13
CDY62475	Canola	nucleus	35.65	46.72
VIT_08s0040g00930.t01	Wine grape	nucleus	45.65	46.36
Bra028741.1-P	Field mustard	nucleus	41.52	46.02
PGSC0003DMT400015245	Potato	nucleus	43.91	46.01
KRG95055	Soybean	nucleus	45.22	45.71
Solyc06g073610.2.1	Tomato	nucleus	43.48	45.45
KRH66713	Soybean	nucleus	44.78	45.37
Bra002046.1-P	Field mustard	nucleus	38.48	45.04
Solyc10g080950.1.1	Tomato	nucleus	45.22	45.02
PGSC0003DMT400018480	Potato	nucleus	41.52	44.94
KRH66715	Soybean	nucleus	38.26	44.9
VIT_06s0009g02090.t01	Wine grape	nucleus	40.65	44.74
AT3G11520.1	Thale cress	nucleus	40.0	44.44
Solyc10g078330.1.1	Tomato	nucleus	40.65	44.21
Bra005880.1-P	Field mustard	nucleus, plastid	39.78	44.2
PGSC0003DMT400072211	Potato	nucleus	44.57	44.18
AT4G37490.1	Thale cress	nucleus	41.09	44.16
KRH73516	Soybean	nucleus	41.96	43.86
KRH14611	Soybean	nucleus	41.74	43.74
VIT_13s0067g01420.t01	Wine grape	nucleus	43.91	43.72
KRH66718	Soybean	plastid	35.43	43.7
AT2G26760.1	Thale cress	nucleus	36.74	43.67
CDX80988	Canola	plastid	40.0	42.99
CDY11354	Canola	plastid	40.43	42.96
CDX69311	Canola	nucleus	38.7	42.48
AT5G06150.1	Thale cress	nucleus	41.09	42.47
CDX75659	Canola	nucleus	39.13	42.06
Bra011769.1-P	Field mustard	nucleus	38.91	41.82
KRG95056	Soybean	cytosol	34.13	40.57
EES02793	Sorghum	nucleus	37.83	37.58
OQU91386	Sorghum	nucleus	19.35	34.1
KXG20945	Sorghum	nucleus	29.57	32.08
EES12664	Sorghum	nucleus	30.0	31.94
CDY14091	Canola	plastid	41.52	29.12
AT1G34460.5	Thale cress	cytosol	28.7	26.51
CDY04980	Canola	nucleus	41.3	26.46
EER95303	Sorghum	nucleus, plastid	21.52	25.98
EES16237	Sorghum	nucleus, plastid	23.26	25.0
OQU77084	Sorghum	nucleus	26.09	24.59
KXG23504	Sorghum	mitochondrion, nucleus	23.91	22.77
KXG21616	Sorghum	nucleus, plastid	23.7	22.76

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.2	EntrezGene:8077040	UniProt:C5Z098	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_C-dom	InterPro:Cyclin_N	EnsemblPlants:EES18429	ProteinID:EES18429	ProteinID:EES18429.1	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771
ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF267	SMART:SM00385	SMART:SM01332	EnsemblPlantsGene:SORBI_3009G181500
SUPFAM:SSF47954	TMHMM:TMhelix	UniParc:UPI0001A88A65	RefSeq:XP_002439999.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr9:+:53545332..53549227

Molecular Weight (calculated)

50361.7 Da

IEP (calculated)

9.825

GRAVY (calculated)

-0.301

Length

460 amino acids

Sequence
(BLAST)

001: MATRNHRAAA AAAAAPQPAN RGAARIAGKQ KDAAAAGRPN ATRPALGDIG NVALSDVLDG GIKLPEGIHR PITRSFGAQL LKAALANKNA VAPAQPVAAR
101: AVTKPARKVP AKNIPRPEQE NRKPSEGAAK NPEGNRKPLE GAAKNPEGNR KPSEGAKNGR KKLVCTLSTV LSARSKAACG LTEKPKPLIE DIDKSDGDNQ
201: FALVDYVEDI YTFYKTAQHE SRPIDYMGNQ PAITYKMRAM LTEWLIESHQ RFHLMPETLY LTIYIVDRYL SLQPVPRAEL QLVGMAAMLI ACKYEEIWAP
301: QVNDFIQIAD CAFSRQQILV AEKAILNSMQ WNLTVPTPYH FLLRFAKAAG SADEQLQNMI YFFGELALMA YGMVTTYPST VAACAVYAAR LTLRKSPLWT
401: ETLKHHTGLH EQQLREGTRM LLRSHAAAPD ANLNAVYEKY SAEQFGRVAL HPPAALPDLV

Best Arabidopsis Sequence Match ( AT5G06150.1 )
(BLAST)

001: MATRANVPEQ VRGAPLVDGL KIQNKNGAVK SRRALGDIGN LVSVPGVQGG KAQPPINRPI TRSFRAQLLA NAQLERKPIN GDNKVPALGP KRQPLAARNP
101: EAQRAVQKKN LVVKQQTKPV EVIETKKEVT KKEVAMSPKN KKVTYSSVLS ARSKAACGIV NKPKIIDIDE SDKDNHLAAV EYVDDMYSFY KEVEKESQPK
201: MYMHIQTEMN EKMRAILIDW LLEVHIKFEL NLETLYLTVN IIDRFLSVKA VPKRELQLVG ISALLIASKY EEIWPPQVND LVYVTDNAYS SRQILVMEKA
301: ILGNLEWYLT VPTQYVFLVR FIKASMSDPE MENMVHFLAE LGMMHYDTLT FCPSMLAASA VYTARCSLNK SPAWTDTLQF HTGYTESEIM DCSKLLAFLH
401: SRCGESRLRA VYKKYSKAEN GGVAMVSPAK SLLSAAADWK KPVSS

Arabidopsis Description

CYCB1-2Cyclin-B1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q39067]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.