CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029174_P005	Maize	nucleus	95.64	95.81
Zm00001d047472_P002	Maize	plastid	96.91	93.67
Os03t0352300-01	Rice	nucleus	90.36	90.04
EER97682	Sorghum	endoplasmic reticulum	83.82	81.59
CDY08398	Canola	cytosol	3.45	79.17
GSMUA_AchrUn_...	Banana	nucleus	80.0	78.85
GSMUA_Achr5P08210_001	Banana	nucleus	77.82	76.98
VIT_17s0000g01720.t01	Wine grape	nucleus	77.27	76.16
AT3G12860.1	Thale cress	nucleus	67.64	74.55
CDY59117	Canola	nucleus	69.45	74.17
KRH57211	Soybean	nucleus	74.0	74.0
Bra040785.1-P	Field mustard	nucleus	69.82	73.7
CDY63487	Canola	nucleus	69.82	73.7
CDY10510	Canola	nucleus	68.73	73.68
Bra001474.1-P	Field mustard	nucleus	67.64	73.66
CDX82572	Canola	nucleus	67.64	73.66
KRH03927	Soybean	nucleus	73.45	73.59
CDY57300	Canola	nucleus	67.45	73.47
PGSC0003DMT400007150	Potato	nucleus	73.82	73.42
CDX98286	Canola	cytosol	18.0	73.33
CDY42406	Canola	nucleus	69.09	73.22
Solyc01g100570.2.1	Tomato	nucleus	73.27	72.88
Bra030816.1-P	Field mustard	nucleus	68.73	72.83
KRH48644	Soybean	nucleus	72.73	72.46
AT1G56110.1	Thale cress	nucleus	68.55	72.22
CDY04069	Canola	cytosol	52.0	64.13
CDY44398	Canola	cytosol	51.45	63.6
Bra033094.1-P	Field mustard	cytosol	51.45	63.6
Bra034724.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	23.82	58.22
CDY52879	Canola	nucleus	33.27	56.66
CDY08399	Canola	endoplasmic reticulum, plasma membrane	16.0	49.72
KXG39385	Sorghum	cytosol	40.73	39.37
KXG34017	Sorghum	cytosol	40.18	38.91
KXG30826	Sorghum	nucleus	16.18	20.37
OQU82106	Sorghum	nucleus	15.27	17.36

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	MapMan:17.1.1.2.1.5.2	EntrezGene:8082289	UniProt:C5WZS5
ncoils:Coil	EnsemblPlants:EER92268	ProteinID:EER92268	ProteinID:EER92268.1	GO:GO:0000154	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0030515	GO:GO:0031428	GO:GO:0032040	InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687	InterPro:IPR029012
InterPro:NOP5_N	InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf	PFAM:PF01798	PFAM:PF08156
PFscan:PS51358	PANTHER:PTHR10894	PANTHER:PTHR10894:SF0	SMART:SM00931	EnsemblPlantsGene:SORBI_3001G371100	SUPFAM:SSF89124
unigene:Sbi.18332	UniParc:UPI0001A82257	RefSeq:XP_002465270.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:65947713..65950984

Molecular Weight (calculated)

60993.7 Da

IEP (calculated)

8.765

GRAVY (calculated)

-0.533

Length

550 amino acids

Sequence
(BLAST)

001: MALYLLFESA SGYGLFHAYG IDEIGQSVEA VRSSVLDLDR FGKAVKLTAF NPFSSAVDAL NQCNAISEGI MTDELRSFLE LNLPKPKEGK KAKYSLGVVE
101: PKVGSHISEV TGIPCQSNEF VQELLRGVRL HFDRFINELK DSDLEKAQLG LGHSYSRAKV KFNVNRVDNM VIQAIFLLDT LDKDINSFSM RVREWFSWHF
201: PELVKIVNDN YLYAKLAKFI VNKSDLAEKD IPALADIVGD EDKAKEIVEA AKASMGQDLS PVDLINVQQF AQRVMNLSEY RKNLYEYLVT KMNDIAPNLT
301: SLIGEVVGAR LISHAGSLSN LAKCAASTLQ ILGAEKALFR ALKTKGNTPK YGLIFHSSFI GRASTKNKGR MARYLANKCS IASRIDCYSE ASTSVFGQKL
401: REQVEERLEF YDKGVAPRKN LDVMKAAIDS MVNDTSMDDD NHKTDASAKK SKKKKTKAEA DGDAMDVDKP SHVADGEAEP GTEKKKKKKK HKLEEAQEEN
501: GAAHANGGAE ETETPKKKKK KSREVSEEAE PKTATEGKKK KKKAKAEDDE

Best Arabidopsis Sequence Match ( AT1G56110.1 )
(BLAST)

001: MAMYVIYESS SGYGLFEVHG LDEIGQNTEA VRTSVSDLSR FGRVVQLTAF HPFESALDAL NQVNAVSEGV MTDELRSFLE LNLPKVKEGK KPKFSLGLAE
101: PKLGSHIFEA TKIPCQSNEF VLELLRGVRQ HFDRFIKDLK PGDLEKSQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYARVSKMI DDKSKLTEDH IPMLTEVLGD EDKAKEVIEA GKASMGSDLS PLDLINVQTF AQKVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARYLANKCS IASRIDCFAD GATTAFGEKL
401: REQVEERLEF YDKGVAPRKN VDVMKEVIEN LKQEEEGKEP VDASVKKSKK KKAKGEEEEE VVAMEEDKSE KKKKKEKRKM ETAEENEKSE KKKTKKSKAG
501: GEEETDDGHS TKKKKKKSKS AE

Arabidopsis Description

NOP56At1g56110/T6H22_9 [Source:UniProtKB/TrEMBL;Acc:Q9SGT7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.