Factsheet for Zm00001d029174_P005

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92268	Sorghum	nucleus	95.81	95.64
Zm00001d047472_P002	Maize	plastid	95.26	91.92
Os03t0352300-01	Rice	nucleus	88.89	88.41
CDY08398	Canola	cytosol	3.46	79.17
GSMUA_AchrUn_...	Banana	nucleus	79.78	78.49
GSMUA_Achr5P08210_001	Banana	nucleus	77.78	76.8
VIT_17s0000g01720.t01	Wine grape	nucleus	76.87	75.63
CDY59117	Canola	nucleus	70.13	74.76
AT3G12860.1	Thale cress	nucleus	67.76	74.55
Bra040785.1-P	Field mustard	nucleus	70.67	74.47
CDY63487	Canola	nucleus	70.67	74.47
CDY10510	Canola	nucleus	69.22	74.07
CDY42406	Canola	nucleus	69.76	73.8
Bra001474.1-P	Field mustard	nucleus	67.58	73.47
CDX82572	Canola	nucleus	67.58	73.47
KRH57211	Soybean	nucleus	73.59	73.45
Bra030816.1-P	Field mustard	nucleus	69.4	73.41
CDX98286	Canola	cytosol	18.03	73.33
CDY57300	Canola	nucleus	67.4	73.27
KRH03927	Soybean	nucleus	73.22	73.22
PGSC0003DMT400007150	Potato	nucleus	73.59	73.06
AT1G56110.1	Thale cress	nucleus	69.03	72.61
Solyc01g100570.2.1	Tomato	nucleus	73.04	72.51
KRH48644	Soybean	nucleus	72.5	72.1
CDY04069	Canola	cytosol	52.09	64.13
Bra033094.1-P	Field mustard	cytosol	51.55	63.6
CDY44398	Canola	cytosol	51.55	63.6
Bra034724.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	23.86	58.22
CDY52879	Canola	nucleus	33.15	56.35
Zm00001d034259_P001	Maize	cytosol	14.57	54.42
CDY08399	Canola	endoplasmic reticulum, plasma membrane	16.03	49.72
Zm00001d007484_P001	Maize	cytosol	28.96	46.36
Zm00001d038818_P001	Maize	cytosol	22.77	43.25
Zm00001d011996_P002	Maize	cytosol	22.59	40.13
Zm00001d047481_P003	Maize	plastid	40.8	39.86
Zm00001d029144_P004	Maize	cytosol	39.89	38.83
Zm00001d031027_P001	Maize	plastid	30.97	28.76
Zm00001d036776_P001	Maize	mitochondrion	30.97	27.64
Zm00001d002716_P002	Maize	nucleus	15.85	17.94

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	EntrezGene:100283975	MapMan:17.1.1.2.1.5.2	UniProt:A0A1D6K377
ncoils:Coil	InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687	InterPro:IPR029012	InterPro:NOP5_N	InterPro:NOSIC
InterPro:Nop_dom	InterPro:Nop_dom_sf	ProteinID:ONL98111.1	PFAM:PF01798	PFAM:PF08156	PFscan:PS51358
PANTHER:PTHR10894	PANTHER:PTHR10894:SF0	SMART:SM00931	SUPFAM:SSF89124	UniParc:UPI000843907A	EnsemblPlantsGene:Zm00001d029174
EnsemblPlants:Zm00001d029174_P005	EnsemblPlants:Zm00001d029174_T005	SEG:seg	:	:	:

Description

homolog of nucleolar protein NOP56

Coordinates

chr1:-:60997143..60999925

Molecular Weight (calculated)

60855.7 Da

IEP (calculated)

9.200

GRAVY (calculated)

-0.521

Length

549 amino acids

Sequence
(BLAST)

001: MALYLLFESA SGYGLFHAYG IDEIGQSVEA VRSSVLDLDR FGKAVKLTAF NPFSSAVDAL NQCNAISEGI MTDELRSFLE LNLPKPKEGK KAKYSLGVVE
101: PKVGSHISEV TGIPCQSNEF VQELLRGVRL HFDRFINELK DSDLEKAQLG LGHSYSRAKV KFNVNRVDNM VIQAIFLLDT LDKDINSFSM RVREWFSWHF
201: PELVKIVNDN YLYAKLAKFI VNKSDLTEKD IPALADIVGD EDKAKEIVEA AKASMGQDLS PVDLINVQQF AQRVMNLSEY RKNLYEYLVT KMNDIAPNLT
301: SLIGEVVGAR LISHAGSLSN LAKCAASTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASTKNKGR MARYLANKCS IASRIDCYSE ASTSVFGQKL
401: REQVEERLEF YDKGVAPRKN LDVMKAAIDS MVNGTSMDDD ATCADIEKTD ASPKKSKKKK TKTKADGDAM DVDKPSNVAG GEAEPGTEKK KKKKKHKLEE
501: EAQEENGAAD TTPKKKKKKS REASEEAEPK TATDGKKKKK KKAKAEDDE

Best Arabidopsis Sequence Match ( AT1G56110.1 )
(BLAST)

001: MAMYVIYESS SGYGLFEVHG LDEIGQNTEA VRTSVSDLSR FGRVVQLTAF HPFESALDAL NQVNAVSEGV MTDELRSFLE LNLPKVKEGK KPKFSLGLAE
101: PKLGSHIFEA TKIPCQSNEF VLELLRGVRQ HFDRFIKDLK PGDLEKSQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYARVSKMI DDKSKLTEDH IPMLTEVLGD EDKAKEVIEA GKASMGSDLS PLDLINVQTF AQKVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARYLANKCS IASRIDCFAD GATTAFGEKL
401: REQVEERLEF YDKGVAPRKN VDVMKEVIEN LKQEEEGKEP VDASVKKSKK KKAKGEEEEE VVAMEEDKSE KKKKKEKRKM ETAEENEKSE KKKTKKSKAG
501: GEEETDDGHS TKKKKKKSKS AE

Arabidopsis Description

NOP56At1g56110/T6H22_9 [Source:UniProtKB/TrEMBL;Acc:Q9SGT7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.