Factsheet for AT1G56110.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42406	Canola	nucleus	92.91	93.45
CDY10510	Canola	nucleus	91.57	93.18
CDY63487	Canola	nucleus	92.91	93.09
Bra040785.1-P	Field mustard	nucleus	92.91	93.09
Bra030816.1-P	Field mustard	nucleus	92.34	92.87
CDY59117	Canola	nucleus	91.57	92.82
AT3G12860.1	Thale cress	nucleus	83.33	87.17
CDX98286	Canola	cytosol	21.46	82.96
VIT_17s0000g01720.t01	Wine grape	nucleus	80.27	75.09
Os07t0661800-01	Rice	nucleus	43.68	72.84
Solyc01g100570.2.1	Tomato	nucleus	76.05	71.79
PGSC0003DMT400007150	Potato	nucleus	76.05	71.79
KRH57211	Soybean	nucleus	75.48	71.64
KRH03927	Soybean	nucleus	74.9	71.22
KRH48644	Soybean	nucleus	74.33	70.29
GSMUA_Achr5P08210_001	Banana	nucleus	74.71	70.14
GSMUA_AchrUn_...	Banana	nucleus	74.33	69.53
TraesCS2B01G148000.1	Wheat	nucleus	71.46	69.07
Zm00001d029174_P005	Maize	nucleus	72.61	69.03
TraesCS2A01G125500.1	Wheat	nucleus	71.26	69.02
TraesCS2D01G128600.1	Wheat	nucleus	71.07	68.83
EER92268	Sorghum	nucleus	72.22	68.55
Os03t0352300-01	Rice	nucleus	71.84	67.93
TraesCS1D01G386500.1	Wheat	nucleus	71.07	67.7
TraesCS1A01G379300.1	Wheat	nucleus	71.07	67.7
TraesCS1B01G401000.1	Wheat	nucleus	70.88	67.4
Zm00001d047472_P002	Maize	plastid	72.03	66.08
HORVU2Hr1G022140.3	Barley	nucleus	70.69	65.89
HORVU1Hr1G083960.6	Barley	nucleus	70.11	65.01
EER97682	Sorghum	endoplasmic reticulum	70.31	64.96
HORVU2Hr1G022110.2	Barley	plastid	66.09	63.07
TraesCS2B01G147900.1	Wheat	plastid	54.41	61.34
TraesCS2D01G128500.1	Wheat	plastid	53.83	60.43
TraesCS2A01G125400.1	Wheat	cytosol, plastid	53.64	60.34
HORVU2Hr1G022120.1	Barley	mitochondrion	56.51	57.73
AT5G27120.1	Thale cress	cytosol	42.34	41.46
AT3G05060.1	Thale cress	cytosol	42.15	41.28
AT5G27140.2	Thale cress	cytosol	32.57	37.78
AT1G60170.1	Thale cress	nucleus	17.62	18.97
AT1G70400.3	Thale cress	cytosol	8.24	15.69

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	MapMan:17.1.1.2.1.5.2	EntrezGene:842063	UniProt:A0A178WNA8
ProteinID:AAF02835.1	ProteinID:AEE33345.1	EMBL:AF302492	ArrayExpress:AT1G56110	EnsemblPlantsGene:AT1G56110	RefSeq:AT1G56110
TAIR:AT1G56110	RefSeq:AT1G56110-TAIR-G	EnsemblPlants:AT1G56110.1	TAIR:AT1G56110.1	EMBL:AY039541	EMBL:AY087080
EMBL:AY102151	Unigene:At.22033	ncoils:Coil	GO:GO:0000154	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009506
GO:GO:0009987	GO:GO:0019013	GO:GO:0030312	GO:GO:0030515	GO:GO:0030529	GO:GO:0031428
GO:GO:0032040	InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687	InterPro:IPR029012	Symbol:NOP56	InterPro:NOP5_N
InterPro:NOSIC	RefSeq:NP_176007.1	InterPro:Nop_dom	InterPro:Nop_dom_sf	ProteinID:OAP19739.1	PFAM:PF01798
PFAM:PF08156	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PFscan:PS51358	PANTHER:PTHR10894	PANTHER:PTHR10894:SF0	UniProt:Q9SGT7	SMART:SM00931	SUPFAM:SSF89124
UniParc:UPI00000A5AB7	SEG:seg	:	:	:	:

Description

NOP56At1g56110/T6H22_9 [Source:UniProtKB/TrEMBL;Acc:Q9SGT7]

Coordinates

chr1:-:20984273..20986952

Molecular Weight (calculated)

58676.5 Da

IEP (calculated)

9.176

GRAVY (calculated)

-0.570

Length

522 amino acids

Sequence
(BLAST)

001: MAMYVIYESS SGYGLFEVHG LDEIGQNTEA VRTSVSDLSR FGRVVQLTAF HPFESALDAL NQVNAVSEGV MTDELRSFLE LNLPKVKEGK KPKFSLGLAE
101: PKLGSHIFEA TKIPCQSNEF VLELLRGVRQ HFDRFIKDLK PGDLEKSQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYARVSKMI DDKSKLTEDH IPMLTEVLGD EDKAKEVIEA GKASMGSDLS PLDLINVQTF AQKVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARYLANKCS IASRIDCFAD GATTAFGEKL
401: REQVEERLEF YDKGVAPRKN VDVMKEVIEN LKQEEEGKEP VDASVKKSKK KKAKGEEEEE VVAMEEDKSE KKKKKEKRKM ETAEENEKSE KKKTKKSKAG
501: GEEETDDGHS TKKKKKKSKS AE

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.