Factsheet for TraesCS1A01G379300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G386500.1	Wheat	nucleus	99.82	99.82
TraesCS1B01G401000.1	Wheat	nucleus	99.45	99.27
HORVU1Hr1G083960.6	Barley	nucleus	96.53	93.96
TraesCS2A01G125500.1	Wheat	nucleus	92.15	93.69
Os07t0661800-01	Rice	nucleus	51.46	90.1
EER97682	Sorghum	endoplasmic reticulum	84.85	82.3
TraesCS2A01G125400.1	Wheat	cytosol, plastid	69.34	81.9
GSMUA_AchrUn_...	Banana	nucleus	77.55	76.16
CDY08398	Canola	cytosol	3.28	75.0
CDX98286	Canola	cytosol	18.43	74.81
VIT_17s0000g01720.t01	Wine grape	nucleus	75.91	74.55
GSMUA_Achr5P08210_001	Banana	nucleus	75.55	74.46
CDY59117	Canola	nucleus	68.98	73.4
CDY10510	Canola	nucleus	68.07	72.71
CDY63487	Canola	nucleus	68.98	72.55
Bra040785.1-P	Field mustard	nucleus	68.98	72.55
CDY42406	Canola	nucleus	68.61	72.45
AT3G12860.1	Thale cress	nucleus	65.88	72.34
Bra030816.1-P	Field mustard	nucleus	68.25	72.06
PGSC0003DMT400007150	Potato	nucleus	71.9	71.25
KRH57211	Soybean	nucleus	71.35	71.09
Bra001474.1-P	Field mustard	nucleus	65.51	71.09
CDX82572	Canola	nucleus	65.51	71.09
AT1G56110.1	Thale cress	nucleus	67.7	71.07
CDY57300	Canola	nucleus	65.33	70.89
Solyc01g100570.2.1	Tomato	nucleus	71.53	70.89
KRH03927	Soybean	nucleus	70.99	70.86
KRH48644	Soybean	nucleus	71.35	70.83
CDY04069	Canola	cytosol	50.73	62.33
Bra033094.1-P	Field mustard	cytosol	50.0	61.57
CDY44398	Canola	cytosol	50.0	61.57
CDY52879	Canola	nucleus	31.93	54.18
Bra034724.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	22.08	53.78
CDY08399	Canola	endoplasmic reticulum, plasma membrane	14.6	45.2
TraesCS2A01G119400.1	Wheat	nucleus	39.78	38.93
TraesCS4A01G141500.1	Wheat	nucleus	39.05	37.02
TraesCS1A01G376100.1	Wheat	nucleus	16.06	18.14
TraesCS2A01G254400.1	Wheat	cytosol	2.19	9.68

Protein Annotations

EnsemblPlants:TraesCS1A01G379300.1	EnsemblPlantsGene:TraesCS1A01G379300	Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	InterPro:Helix_hairpin_bin_sf
InterPro:IPR002687	InterPro:IPR029012	InterPro:NOP5_N	InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf
PANTHER:PTHR10894	PANTHER:PTHR10894:SF0	PFAM:PF01798	PFAM:PF08156	PFscan:PS51358	SEG:seg
SMART:SM00931	SUPFAM:SSF89124	MapMan:17.1.1.2.1.5.2	:	:	:

Description

No Description!

Coordinates

chr1A:-:551484227..551487560

Molecular Weight (calculated)

61118.1 Da

IEP (calculated)

9.058

GRAVY (calculated)

-0.565

Length

548 amino acids

Sequence
(BLAST)

001: MALYLLFESA SGYALFHAHG IDEIGQSVDA VRSTVLDLKR FSKAVKLAGF TPFLSAVDAL NQCNAISEGI MTDELRNFLE LNLPKVKEGK KAKFRVGVME
101: PKVGSHITEA TGIPCESNDY VQELLRAVRL HFDQFIDQLK PSDLEKAQLG LGHSYSRAKV KFNVNRVDNM VIQAIFLLDT LDKDVNSFSM RVREWYGWHF
201: PELVKIVNDN YLYAKLAKFV VNKSDLSEKD IPALADLIGD EDKAKEIVEA AKASMGQDLS PVDLINVQQF AQRVMNLSEY RKNLYEYLVT KMNDIAPNLT
301: SLIGEMVGAR LISHAGSLSN LAKCPASTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASTKNKGR MARYLANKCS IASRIDCYSD MSSSIFGEKL
401: REQVEERLDF YDKGVAPRKN LDVMKAAIEE GMTNTVSEED KEKENGDTTA KKSKKKKSKS EADGDAMDLD KPANTAAAEE GTEKKKKKKK HKLEEPQDQE
501: MAANVDGEQD ETPKKKKKKN RDAAESVEPK TATEGKKKKK KSKTEADD

Best Arabidopsis Sequence Match ( AT3G12860.1 )
(BLAST)

001: MKIYLLSESP SGYGLFEGHG SDEIGQNTEA VRSSVSDLSR FGRVVQLTAF HPFQSALDAL NQINAVSEGY MSDELRSFLE LNLPKVKEGK KPKFSLGVSE
101: PKIGSCIFEA TKIPCQSNEF VHELLRGVRQ HFDRFIKDLK PGDLEKAQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYAKVSKII VDKSKLSEEH IPMLTEALGD EDKAREVIEA GKASMGQDLS PVDLINVQTF AQRVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARFLANKCS IASRIDCFSD NSTTAFGEKL
401: REQVEERLDF YDKGVAPRKN VDVMKEVLEN LEKKDEGEKT VDASEKKKKR KTEEKEEEKE EEKSKKKKKK SKAVEGEELT ATDNGHSKKK KKTKSQDDE

Arabidopsis Description

NOP56-like pre RNA processing ribonucleoprotein [Source:UniProtKB/TrEMBL;Acc:Q9LTV0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.