CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44398	Canola	cytosol	92.83	93.03
CDY08398	Canola	cytosol	4.26	79.17
CDY57300	Canola	nucleus	74.44	65.74
CDX82572	Canola	nucleus	73.99	65.35
Os07t0661800-01	Rice	nucleus	45.07	64.22
CDY10510	Canola	nucleus	73.32	63.74
CDY59117	Canola	nucleus	73.09	63.3
CDX98286	Canola	cytosol	19.06	62.96
CDY63487	Canola	nucleus	73.32	62.76
CDY42406	Canola	nucleus	72.87	62.62
GSMUA_Achr5P08210_001	Banana	nucleus	66.82	53.6
GSMUA_AchrUn_...	Banana	nucleus	65.92	52.69
TraesCS2A01G125500.1	Wheat	nucleus	63.45	52.5
TraesCS2B01G148000.1	Wheat	nucleus	63.45	52.41
TraesCS2A01G125400.1	Wheat	cytosol, plastid	54.26	52.16
Zm00001d029174_P005	Maize	nucleus	64.13	52.09
EER92268	Sorghum	nucleus	64.13	52.0
TraesCS2D01G128600.1	Wheat	nucleus	62.78	51.95
TraesCS2B01G147900.1	Wheat	plastid	53.81	51.84
TraesCS2D01G128500.1	Wheat	plastid	54.04	51.83
TraesCS1D01G386500.1	Wheat	nucleus	62.33	50.73
TraesCS1A01G379300.1	Wheat	nucleus	62.33	50.73
TraesCS1B01G401000.1	Wheat	nucleus	62.33	50.64
Os03t0352300-01	Rice	nucleus	62.56	50.54
Zm00001d047472_P002	Maize	plastid	63.68	49.91
HORVU2Hr1G022140.3	Barley	nucleus	62.11	49.46
EER97682	Sorghum	endoplasmic reticulum	62.11	49.03
HORVU1Hr1G083960.6	Barley	nucleus	61.44	48.67
HORVU2Hr1G022120.1	Barley	mitochondrion	55.38	48.34
CDY52879	Canola	nucleus	34.98	48.3
CDY08399	Canola	endoplasmic reticulum, plasma membrane	18.83	47.46
HORVU2Hr1G022110.2	Barley	plastid	56.5	46.07
CDX86179	Canola	nucleus	39.69	32.96
CDY52494	Canola	nucleus	39.24	32.96
CDX80674	Canola	cytosol	39.46	32.84
CDY19706	Canola	nucleus	39.01	32.52
CDY00004	Canola	nucleus	39.01	32.46
CDY50583	Canola	cytosol, mitochondrion, nucleus, plastid	37.89	32.19
CDY72546	Canola	nucleus	14.8	15.71
CDY24519	Canola	nucleus	16.37	15.02
CDY04340	Canola	plasma membrane	15.92	14.95
CDY54131	Canola	mitochondrion	16.14	14.57
CDY39628	Canola	nucleus	13.68	13.38
CDY36542	Canola	nucleus	12.11	12.89

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	MapMan:17.1.1.2.1.5.2	EnsemblPlants:CDY04069	ProteinID:CDY04069
ProteinID:CDY04069.1	EnsemblPlantsGene:GSBRNA2T00117675001	InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687	InterPro:IPR029012	InterPro:NOP5_N
InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf	PFAM:PF01798	PFAM:PF08156	PFscan:PS51358
PANTHER:PTHR10894	PANTHER:PTHR10894:SF0	SMART:SM00931	SUPFAM:SSF89124	UniParc:UPI0004EE3237	SEG:seg

Description

BnaC02g37840D

Coordinates

chrLK031948:-:902018..904205

Molecular Weight (calculated)

49239.1 Da

IEP (calculated)

4.785

GRAVY (calculated)

-0.296

Length

446 amino acids

Sequence
(BLAST)

001: MAMFVLYESF SGYALFDVHG LDEIGQNVEA VQTSVSDLAQ FGQVVKLTAF HPWQTAQDAL NQINAVSEGF MSEELRSFLD LNLPKVEEGV EPKFSLGVSD
101: PKLGSCISEA TKIPCQSNEF VQELLRGVRQ HFDSFINDLK PGGFEKAQQG LAHSYSRAKV KHNVNRKDHM VIQTISLLDT LDKDINSYAM RTREWYSPHF
201: PELDKIVNDN YMYAQASKII EDKSKLSEEH VPVLTEVLGG DEDKAREVVE AGQASMGLGL SPLDLLHAQT FAQGVIDLTD YRKKLYDYLV VKVKDVAPNL
301: AALIGETVAA RLISHAGSLI NLAKHPSSTL QILGAERALF RALRTGGKTP KHGLISHSSF IGRASARNKG RMARCLAGKC SIAARVDYFG DNSSADFGEK
401: LRGQVEERLD SLHNVYAMEE VLEDEEIVDA SGEEIDEEEA AADDDE

Best Arabidopsis Sequence Match ( AT1G56110.1 )
(BLAST)

001: MAMYVIYESS SGYGLFEVHG LDEIGQNTEA VRTSVSDLSR FGRVVQLTAF HPFESALDAL NQVNAVSEGV MTDELRSFLE LNLPKVKEGK KPKFSLGLAE
101: PKLGSHIFEA TKIPCQSNEF VLELLRGVRQ HFDRFIKDLK PGDLEKSQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYARVSKMI DDKSKLTEDH IPMLTEVLGD EDKAKEVIEA GKASMGSDLS PLDLINVQTF AQKVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARYLANKCS IASRIDCFAD GATTAFGEKL
401: REQVEERLEF YDKGVAPRKN VDVMKEVIEN LKQEEEGKEP VDASVKKSKK KKAKGEEEEE VVAMEEDKSE KKKKKEKRKM ETAEENEKSE KKKTKKSKAG
501: GEEETDDGHS TKKKKKKSKS AE

Arabidopsis Description

NOP56At1g56110/T6H22_9 [Source:UniProtKB/TrEMBL;Acc:Q9SGT7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.