CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, peroxisome, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	peroxisome
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72546	Canola	nucleus	88.0	99.52
CDY24519	Canola	nucleus	94.53	92.39
CDY54131	Canola	mitochondrion	94.32	90.69
AT1G60170.1	Thale cress	nucleus	89.05	87.22
KRH07033	Soybean	nucleus	77.68	75.93
KRG94405	Soybean	nucleus	77.47	75.72
GSMUA_Achr3P06150_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	76.42	73.78
Os07t0141600-01	Rice	nucleus	74.74	73.35
OQU82106	Sorghum	nucleus	74.74	73.35
Os04t0555400-01	Rice	nucleus	74.53	73.14
Zm00001d002716_P002	Maize	nucleus	74.53	72.99
TraesCS1D01G383400.2	Wheat	nucleus	74.32	72.78
TraesCS1A01G376100.1	Wheat	nucleus	74.32	72.78
TraesCS2B01G046400.1	Wheat	nucleus	72.42	72.27
VIT_01s0026g00230.t01	Wine grape	cytosol	74.74	69.74
TraesCS1B01G396600.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	74.32	68.41
CDY36542	Canola	nucleus	60.0	68.02
CDY39628	Canola	nucleus	64.42	67.11
TraesCS2B01G267700.1	Wheat	cytosol	63.79	64.74
GSMUA_Achr9P14550_001	Banana	plasma membrane	56.63	61.56
KXG30826	Sorghum	nucleus	55.37	60.18
Os02t0730100-00	Rice	extracellular	15.58	50.34
CDX98286	Canola	cytosol	7.37	25.93
CDX86179	Canola	nucleus	20.42	18.06
CDX80674	Canola	cytosol	20.21	17.91
CDY10510	Canola	nucleus	19.16	17.74
CDY63487	Canola	nucleus	19.37	17.66
CDY42406	Canola	nucleus	19.16	17.53
CDY52494	Canola	nucleus	19.58	17.51
CDY59117	Canola	nucleus	18.95	17.48
CDY50583	Canola	cytosol, mitochondrion, nucleus, plastid	19.16	17.33
CDY57300	Canola	nucleus	18.32	17.23
CDY19706	Canola	nucleus	19.37	17.2
CDY00004	Canola	nucleus	19.37	17.16
CDX82572	Canola	nucleus	18.11	17.03
CDY44398	Canola	cytosol	15.16	16.18
CDY04069	Canola	cytosol	14.95	15.92
CDY52879	Canola	nucleus	9.68	14.24
CDY08398	Canola	cytosol	0.63	12.5
CDY08399	Canola	endoplasmic reticulum, plasma membrane	2.53	6.78

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	MapMan:16.4.1.3.3	GO:A0A078EQV6	EnsemblPlants:CDY04340
ProteinID:CDY04340	ProteinID:CDY04340.1	GO:GO:0000244	GO:GO:0000398	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0046540	EnsemblPlantsGene:GSBRNA2T00118208001	InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687	InterPro:IPR029012
InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf	PFAM:PF01798	PFAM:PF09785	PFscan:PS51358
PANTHER:PTHR13904	PANTHER:PTHR13904:SF0	InterPro:Prp31	InterPro:Prp31_C	SMART:SM00931	SUPFAM:SSF89124
SignalP:SignalP-noTM	UniParc:UPI0004EDF62D	SEG:seg	:	:	:

Description

BnaC04g18530D

Coordinates

chrLK031952:+:16593..19083

Molecular Weight (calculated)

51692.9 Da

IEP (calculated)

5.203

GRAVY (calculated)

-0.348

Length

475 amino acids

Sequence
(BLAST)

001: MVIISLTLPS LLFTATLEDS FLADLDDLSD NEAEVDESDG DDGKDKEDID MDMADLETLN YDDLDSVSKL QKSQRYLDIM QKVEEALGKD SDGAEKGTVL
101: EDDPEYKLIV DCNQLSVDIE NEIAIVHNFI RDKYRLKFQE LESLVNHPID YARVVKKIGN ETDLTRVDLE GLLPSAIIMV VSVTALTTKG SPLPEEVLQK
201: TLEACDRALE LDSARKKVLD FVESKMGSIA PNLSAIVGSA VAAKLMGTAG GLSALAKMPA CNVQVLGQKR KNLAGFSSAT SQSRVGYLDQ TEIFQSTPPA
301: LRMRAGRILA AKSTLAARIE KWQEPPPARQ PKPLPVPDSE PKKRRGGRRL RKMKERYAVT DMRKLANRMA FGTPEESSLG DGLGEGYGML GQAGSNRLRI
401: SSVPSKLKIN PTIAKKLKER NYAGGATTSG LTSSLAFTPV QGIELCNPQQ ALGLGSGTQS TYFSESGTFS KLKKI

Best Arabidopsis Sequence Match ( AT1G60170.1 )
(BLAST)

001: MATLEDSFLA DLDELSDNEA ELDENDGDVG KEEEDVDMDM ADLETLNYDD LDNVSKLQKS QRYADIMHKV EEALGKDSDG AEKGTVLEDD PEYKLIVDCN
101: QLSVDIENEI VIVHNFIKDK YKLKFQELES LVHHPIDYAC VVKKIGNETD LALVDLADLL PSAIIMVVSV TALTTKGSAL PEDVLQKVLE ACDRALDLDS
201: ARKKVLEFVE SKMGSIAPNL SAIVGSAVAA KLMGTAGGLS ALAKMPACNV QVLGHKRKNL AGFSSATSQS RVGYLEQTEI YQSTPPGLQA RAGRLVAAKS
301: TLAARVDATR GDPLGISGKA FREEIRKKIE KWQEPPPARQ PKPLPVPDSE PKKRRGGRRL RKMKERYQVT DMRKLANRMA FGTPEESSLG DGLGEGYGML
401: GQAGSNRLRV SSVPSKLKIN AKVAKKLKER QYAGGATTSG LTSSLAFTPV QGIELCNPQQ ALGLGSGTQS TYFSESGTFS KLKKI

Arabidopsis Description

PRP31Emb1220 [Source:UniProtKB/TrEMBL;Acc:A0A178WCJ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.