CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04340	Canola	plasma membrane	99.52	88.0
CDY24519	Canola	nucleus	97.62	84.36
CDY54131	Canola	mitochondrion	96.9	82.39
AT1G60170.1	Thale cress	nucleus	92.38	80.0
KRH07033	Soybean	nucleus	80.95	69.96
KRG94405	Soybean	nucleus	80.71	69.75
OQU82106	Sorghum	nucleus	78.57	68.18
GSMUA_Achr3P06150_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	79.76	68.09
Zm00001d002716_P002	Maize	nucleus	78.33	67.84
Os07t0141600-01	Rice	nucleus	78.1	67.77
Os04t0555400-01	Rice	nucleus	77.86	67.56
TraesCS1D01G383400.2	Wheat	nucleus	77.62	67.22
TraesCS1A01G376100.1	Wheat	nucleus	77.62	67.22
TraesCS2B01G046400.1	Wheat	nucleus	75.48	66.6
VIT_01s0026g00230.t01	Wine grape	cytosol	78.1	64.44
TraesCS1B01G396600.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	77.62	63.18
CDY36542	Canola	nucleus	61.9	62.05
CDY39628	Canola	nucleus	66.9	61.62
TraesCS2B01G267700.1	Wheat	cytosol	67.14	60.26
KXG30826	Sorghum	nucleus	59.29	56.98
GSMUA_Achr9P14550_001	Banana	plasma membrane	57.86	55.61
Os02t0730100-00	Rice	extracellular	15.48	44.22
CDX98286	Canola	cytosol	8.57	26.67
CDX86179	Canola	nucleus	21.67	16.95
CDX80674	Canola	cytosol	21.43	16.79
CDY50583	Canola	cytosol, mitochondrion, nucleus, plastid	20.95	16.76
CDY10510	Canola	nucleus	20.24	16.57
CDY63487	Canola	nucleus	20.48	16.51
CDY52494	Canola	nucleus	20.71	16.38
CDY42406	Canola	nucleus	20.24	16.38
CDY59117	Canola	nucleus	20.0	16.31
CDY19706	Canola	nucleus	20.48	16.07
CDY00004	Canola	nucleus	20.48	16.04
CDY57300	Canola	nucleus	19.29	16.04
CDX82572	Canola	nucleus	18.81	15.64
CDY44398	Canola	cytosol	15.95	15.06
CDY04069	Canola	cytosol	15.71	14.8
CDY52879	Canola	nucleus	10.24	13.31
CDY08398	Canola	cytosol	0.71	12.5
CDY08399	Canola	endoplasmic reticulum, plasma membrane	2.38	5.65

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	MapMan:16.4.1.3.3	GO:A0A078K460	UniProt:A0A078K460
EnsemblPlants:CDY72546	ProteinID:CDY72546	ProteinID:CDY72546.1	GO:GO:0000244	GO:GO:0000398	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0046540	EnsemblPlantsGene:GSBRNA2T00030546001	InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687
InterPro:IPR029012	InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf	PFAM:PF01798	PFAM:PF09785
PFscan:PS51358	PANTHER:PTHR13904	InterPro:Prp31	InterPro:Prp31_C	SMART:SM00931	SUPFAM:SSF89124
UniParc:UPI0004EEC987	SEG:seg	:	:	:	:

Description

BnaCnng78220DBnaCnng78220D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078K460]

Coordinates

chrLK051726:-:69..2067

Molecular Weight (calculated)

45762.3 Da

IEP (calculated)

9.491

GRAVY (calculated)

-0.360

Length

420 amino acids

Sequence
(BLAST)

001: EDIDMDMADL ETLNYDDLDS VSKLQKSQRY LDIMQKVEEA LGKDSDGAEK GTVLEDDPEY KLIVDCNQLS VDIENEIAIV HNFIRDKYRL KFQELESLVN
101: HPIDYARVVK KIGNETDLTR VDLEGLLPSA IIMVVSVTAL TTKGSPLPEE VLQKTLEACD RALDLDSARK KVLDFVESKM GSIAPNLSAI VGSAVAAKLM
201: GTAGGLSALA KMPACNVQVL GQKRKNLAGF SSATSQSRVG YLDQTEIFQS TPPALRMRAG RILAAKSTLA ARIEKWQEPP PARQPKPLPV PDSEPKKRRG
301: GRRLRKMKER YAVTDMRKLA NRMAFGTPEE SSLGDGLGEG YGMLGQAGSN RLRISSVPSK LKINPTIAKK LKERNYAGGA TTSGLTSSLA FTPVQGIELC
401: NPQQALGLGK SGTFSKLKKI

Best Arabidopsis Sequence Match ( AT1G60170.1 )
(BLAST)

001: MATLEDSFLA DLDELSDNEA ELDENDGDVG KEEEDVDMDM ADLETLNYDD LDNVSKLQKS QRYADIMHKV EEALGKDSDG AEKGTVLEDD PEYKLIVDCN
101: QLSVDIENEI VIVHNFIKDK YKLKFQELES LVHHPIDYAC VVKKIGNETD LALVDLADLL PSAIIMVVSV TALTTKGSAL PEDVLQKVLE ACDRALDLDS
201: ARKKVLEFVE SKMGSIAPNL SAIVGSAVAA KLMGTAGGLS ALAKMPACNV QVLGHKRKNL AGFSSATSQS RVGYLEQTEI YQSTPPGLQA RAGRLVAAKS
301: TLAARVDATR GDPLGISGKA FREEIRKKIE KWQEPPPARQ PKPLPVPDSE PKKRRGGRRL RKMKERYQVT DMRKLANRMA FGTPEESSLG DGLGEGYGML
401: GQAGSNRLRV SSVPSKLKIN AKVAKKLKER QYAGGATTSG LTSSLAFTPV QGIELCNPQQ ALGLGSGTQS TYFSESGTFS KLKKI

Arabidopsis Description

PRP31Emb1220 [Source:UniProtKB/TrEMBL;Acc:A0A178WCJ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.