Factsheet for Zm00001d002716_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU82106	Sorghum	nucleus	96.91	97.11
Os04t0555400-01	Rice	nucleus	93.2	93.39
Os07t0141600-01	Rice	nucleus	92.78	92.98
TraesCS2B01G046400.1	Wheat	nucleus	88.66	90.34
TraesCS1D01G383400.2	Wheat	nucleus	89.9	89.9
TraesCS1A01G376100.1	Wheat	nucleus	89.9	89.9
GSMUA_Achr3P06150_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	86.39	85.16
Solyc08g078430.2.1	Tomato	nucleus	84.74	85.09
PGSC0003DMT400012169	Potato	nucleus	84.74	85.09
TraesCS1B01G396600.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	90.1	84.69
KRG94405	Soybean	nucleus	84.54	84.36
KRH07033	Soybean	nucleus	84.54	84.36
TraesCS2B01G267700.1	Wheat	cytosol	80.62	83.55
VIT_01s0026g00230.t01	Wine grape	cytosol	83.3	79.37
CDY72546	Canola	nucleus	67.84	78.33
Bra031522.1-P	Field mustard	nucleus	76.7	76.54
AT1G60170.1	Thale cress	nucleus	75.05	75.05
CDY04340	Canola	plasma membrane	72.99	74.53
CDY24519	Canola	nucleus	73.61	73.46
CDY54131	Canola	mitochondrion	73.61	72.27
GSMUA_Achr9P14550_001	Banana	plasma membrane	64.54	71.62
Solyc07g064070.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	62.27	66.67
PGSC0003DMT400049589	Potato	cytosol, nucleus, plastid	62.89	66.3
PGSC0003DMT400000083	Potato	cytosol, nucleus, plasma membrane	61.86	65.79
CDY39628	Canola	nucleus	61.86	65.79
CDY36542	Canola	nucleus	56.29	65.16
Bra026149.1-P	Field mustard	nucleus	64.12	64.26
AT1G70400.3	Thale cress	cytosol	28.87	51.09
Zm00001d034259_P001	Maize	cytosol	10.1	33.33
Zm00001d038818_P001	Maize	cytosol	12.37	20.76
Zm00001d011996_P002	Maize	cytosol	12.78	20.06
Zm00001d007484_P001	Maize	cytosol	14.02	19.83
Zm00001d047481_P003	Maize	plastid	19.59	16.9
Zm00001d029144_P004	Maize	cytosol	19.38	16.67
Zm00001d029174_P005	Maize	nucleus	17.94	15.85
Zm00001d047472_P002	Maize	plastid	18.56	15.82
Zm00001d031027_P001	Maize	plastid	15.26	12.52
Zm00001d036776_P001	Maize	mitochondrion	15.26	12.03

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	EntrezGene:100194058	MapMan:16.4.1.3.3	UniProt:B4FHA5
EMBL:BT036493	GO:GO:0000244	GO:GO:0000398	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0019013	GO:GO:0030529	GO:GO:0046540	InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687	InterPro:IPR029012
InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf	ProteinID:ONM15184.1	ProteinID:ONM15185.1	PFAM:PF01798
PFAM:PF09785	PFscan:PS51358	PANTHER:PTHR13904	PANTHER:PTHR13904:SF0	InterPro:Prp31	InterPro:Prp31_C
SMART:SM00931	SUPFAM:SSF89124	UniParc:UPI00017B6E53	EnsemblPlantsGene:Zm00001d002716	EnsemblPlants:Zm00001d002716_P002	EnsemblPlants:Zm00001d002716_T002
SEG:seg	:	:	:	:	:

Description

pre-mRNA processing ribonucleoprotein binding region-containing protein

Coordinates

chr2:-:20247253..20251280

Molecular Weight (calculated)

52837.0 Da

IEP (calculated)

5.479

GRAVY (calculated)

-0.460

Length

485 amino acids

Sequence
(BLAST)

001: MANLADSFLA DLDELSDNEG YPEEDNAEAA GRDDDEDDDM PDLESLNYDD LDSVSKLQKT QRYNDIMQKV ENALQKGTDF SNQGSILEED PEYQLIVDCN
101: ALSVDIENEI IIIHNFIRDK YRLKFPELES LVHHPIDYAR VVKKIGNEMD LTLVDLEGLL PSAIIMVVSV TASTTSGKPL SEDNLEKTTE ACDRALTLDA
201: SKKKVLDFVE SRMGYIAPNL SAIVGSAVAS KLMGTAGGLG ALAKMPACNV QLLGAKRKNL AGFSTATSQF RVGYLEQTEV FQSTPPPLRT RACRLIAAKS
301: TLAARIDSIR GDPTGKAGRN LLEEIRKKIE KWQEPPPAKL PKPLPVPDSE PKKKRGGRRL RKMKERYAQT DMMKLANRMQ FGIPEESSLG DGLGEGYGML
401: GQAGSGKLRV SAGQSKLAAK VAKKFKEKSY GSSGATSGLT SSLAFTPVQG IELSNPQVQG NLLGGGTQST YFSETGTFSK IRRTQ

Best Arabidopsis Sequence Match ( AT1G60170.1 )
(BLAST)

001: MATLEDSFLA DLDELSDNEA ELDENDGDVG KEEEDVDMDM ADLETLNYDD LDNVSKLQKS QRYADIMHKV EEALGKDSDG AEKGTVLEDD PEYKLIVDCN
101: QLSVDIENEI VIVHNFIKDK YKLKFQELES LVHHPIDYAC VVKKIGNETD LALVDLADLL PSAIIMVVSV TALTTKGSAL PEDVLQKVLE ACDRALDLDS
201: ARKKVLEFVE SKMGSIAPNL SAIVGSAVAA KLMGTAGGLS ALAKMPACNV QVLGHKRKNL AGFSSATSQS RVGYLEQTEI YQSTPPGLQA RAGRLVAAKS
301: TLAARVDATR GDPLGISGKA FREEIRKKIE KWQEPPPARQ PKPLPVPDSE PKKRRGGRRL RKMKERYQVT DMRKLANRMA FGTPEESSLG DGLGEGYGML
401: GQAGSNRLRV SSVPSKLKIN AKVAKKLKER QYAGGATTSG LTSSLAFTPV QGIELCNPQQ ALGLGSGTQS TYFSESGTFS KLKKI

Arabidopsis Description

PRP31Emb1220 [Source:UniProtKB/TrEMBL;Acc:A0A178WCJ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.