Factsheet for Bra031522.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24519	Canola	nucleus	95.06	95.06
CDY54131	Canola	mitochondrion	94.44	92.92
AT1G60170.1	Thale cress	nucleus	91.77	91.96
KRH07033	Soybean	nucleus	79.63	79.63
KRG94405	Soybean	nucleus	79.42	79.42
GSMUA_Achr3P06150_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	78.4	77.44
OQU82106	Sorghum	nucleus	76.75	77.07
Zm00001d002716_P002	Maize	nucleus	76.54	76.7
Os04t0555400-01	Rice	nucleus	76.13	76.45
Os07t0141600-01	Rice	nucleus	75.93	76.24
TraesCS1D01G383400.2	Wheat	nucleus	75.72	75.88
TraesCS1A01G376100.1	Wheat	nucleus	75.72	75.88
TraesCS2B01G046400.1	Wheat	nucleus	74.07	75.63
VIT_01s0026g00230.t01	Wine grape	cytosol	76.34	72.89
Bra026149.1-P	Field mustard	nucleus	71.4	71.69
TraesCS1B01G396600.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	75.51	71.12
TraesCS2B01G267700.1	Wheat	cytosol	65.23	67.73
GSMUA_Achr9P14550_001	Banana	plasma membrane	59.47	66.13
KXG30826	Sorghum	nucleus	56.79	63.16
Os02t0730100-00	Rice	extracellular	15.43	51.02
Bra009978.1-P	Field mustard	nucleus	21.4	19.37
Bra040785.1-P	Field mustard	nucleus	20.37	19.0
Bra030816.1-P	Field mustard	nucleus	19.96	18.69
Bra020601.1-P	Field mustard	nucleus	18.72	18.65
Bra036111.1-P	Field mustard	nucleus	20.37	18.47
Bra001474.1-P	Field mustard	nucleus	18.93	18.22
Bra033094.1-P	Field mustard	cytosol	16.46	17.98
Bra034724.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	4.94	10.67

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	MapMan:16.4.1.3.3	EnsemblPlantsGene:Bra031522	EnsemblPlants:Bra031522.1
EnsemblPlants:Bra031522.1-P	GO:GO:0000244	GO:GO:0000398	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006259	GO:GO:0006346	GO:GO:0006950
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009058	GO:GO:0009409
GO:GO:0009628	GO:GO:0009791	GO:GO:0009845	GO:GO:0009987	GO:GO:0015030	GO:GO:0016043
GO:GO:0040029	GO:GO:0046540	GO:GO:0070417	InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687	InterPro:IPR029012
UniProt:M4ERU5	InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf	PFAM:PF01798	PFAM:PF09785
PFscan:PS51358	PANTHER:PTHR13904	PANTHER:PTHR13904:SF0	InterPro:Prp31	InterPro:Prp31_C	SMART:SM00931
SUPFAM:SSF89124	UniParc:UPI0002544ABE	SEG:seg	:	:	:

Description

AT1G60170 (E=4e-222) emb1220 | emb1220 (embryo defective 1220)

Coordinates

chrA01:+:16747989..16750137

Molecular Weight (calculated)

52882.1 Da

IEP (calculated)

5.350

GRAVY (calculated)

-0.445

Length

486 amino acids

Sequence
(BLAST)

001: MATLEDSFLA DLDDLSDNEA ELDESDGDDA KKDEEDIDMD MADLETLNYD DLDSVSKLQK SQRYLDIMQK VEEALGKESD GTEKGTVLED DPEYKLIVDC
101: NQLSVDIENE IAIVHNFIRD KYRLKFQELE SLVNHPIDYA RVVKKIGNET DLTLVDLEGL LPSAIIMVVS VTALTTKGSP LPEDVLQKTL EACDRALDLD
201: SARKKVLDFV ESKMGSIAPN LSAIVGSAVA AKLMGTAGGL SALAKMPACN VQVLGHKRKN LAGFSSATSQ LRVGYLEQTE IFQSTPPALK SRAGRILAAK
301: STLAARVDAT RGDPSGTNGK ALREEIRKKI EKWQEPPPAR QPKPLPVPDS EPKKRRGGRR LRKMKERYAV TDMRKLANRM AFGTPEESSL GDGLGEGYGM
401: LGQAGSNRLR ISSVPSKLKI NPTIAKKLKE RNYAGGATTS GLTSSLAFTP VQGIELCNPQ QALGLGSGTQ STYFSESGTF SKLKKI

Best Arabidopsis Sequence Match ( AT1G60170.1 )
(BLAST)

001: MATLEDSFLA DLDELSDNEA ELDENDGDVG KEEEDVDMDM ADLETLNYDD LDNVSKLQKS QRYADIMHKV EEALGKDSDG AEKGTVLEDD PEYKLIVDCN
101: QLSVDIENEI VIVHNFIKDK YKLKFQELES LVHHPIDYAC VVKKIGNETD LALVDLADLL PSAIIMVVSV TALTTKGSAL PEDVLQKVLE ACDRALDLDS
201: ARKKVLEFVE SKMGSIAPNL SAIVGSAVAA KLMGTAGGLS ALAKMPACNV QVLGHKRKNL AGFSSATSQS RVGYLEQTEI YQSTPPGLQA RAGRLVAAKS
301: TLAARVDATR GDPLGISGKA FREEIRKKIE KWQEPPPARQ PKPLPVPDSE PKKRRGGRRL RKMKERYQVT DMRKLANRMA FGTPEESSLG DGLGEGYGML
401: GQAGSNRLRV SSVPSKLKIN AKVAKKLKER QYAGGATTSG LTSSLAFTPV QGIELCNPQQ ALGLGSGTQS TYFSESGTFS KLKKI

Arabidopsis Description

PRP31Emb1220 [Source:UniProtKB/TrEMBL;Acc:A0A178WCJ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.