CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07033	Soybean	nucleus	99.38	99.38
Solyc08g078430.2.1	Tomato	nucleus	88.27	88.82
PGSC0003DMT400012169	Potato	nucleus	88.07	88.61
GSMUA_Achr3P06150_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	86.42	85.37
OQU82106	Sorghum	nucleus	84.36	84.71
Zm00001d002716_P002	Maize	nucleus	84.36	84.54
Os07t0141600-01	Rice	nucleus	83.74	84.09
Os04t0555400-01	Rice	nucleus	83.74	84.09
TraesCS2B01G046400.1	Wheat	nucleus	80.66	82.35
VIT_01s0026g00230.t01	Wine grape	cytosol	86.01	82.12
TraesCS1A01G376100.1	Wheat	nucleus	81.89	82.06
TraesCS1D01G383400.2	Wheat	nucleus	81.89	82.06
CDY72546	Canola	nucleus	69.75	80.71
Bra031522.1-P	Field mustard	nucleus	79.42	79.42
AT1G60170.1	Thale cress	nucleus	77.98	78.14
CDY04340	Canola	plasma membrane	75.72	77.47
TraesCS1B01G396600.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	81.48	76.74
CDY24519	Canola	nucleus	76.54	76.54
CDY54131	Canola	mitochondrion	76.13	74.9
TraesCS2B01G267700.1	Wheat	cytosol	71.19	73.93
GSMUA_Achr9P14550_001	Banana	plasma membrane	64.4	71.62
KXG30826	Sorghum	nucleus	61.32	68.19
PGSC0003DMT400000083	Potato	cytosol, nucleus, plasma membrane	63.58	67.76
CDY36542	Canola	nucleus	58.02	67.3
CDY39628	Canola	nucleus	62.76	66.89
Bra026149.1-P	Field mustard	nucleus	66.26	66.53
PGSC0003DMT400049589	Potato	cytosol, nucleus, plastid	62.76	66.3
Solyc07g064070.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	61.52	66.0
Os02t0730100-00	Rice	extracellular	18.31	60.54
AT1G70400.3	Thale cress	cytosol	29.42	52.19
KRH29399	Soybean	nucleus	20.16	17.79
KRH24415	Soybean	nucleus	20.16	17.63
KRH57211	Soybean	nucleus	18.31	16.18
KRH03927	Soybean	nucleus	18.11	16.03
KRH48644	Soybean	nucleus	17.9	15.76

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	EntrezGene:100818919	MapMan:16.4.1.3.3	EMBL:ACUP02011952
ncoils:Coil	EnsemblPlantsGene:GLYMA_19G082500	GO:GO:0000244	GO:GO:0000398	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005687	GO:GO:0005690	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0046540	GO:GO:0071011	GO:GO:0097526
InterPro:Helix_hairpin_bin_sf	UniProt:I1N7K6	InterPro:IPR002687	InterPro:IPR029012	EnsemblPlants:KRG94405	ProteinID:KRG94405
ProteinID:KRG94405.1	InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf	PFAM:PF01798	PFAM:PF09785
PFscan:PS51358	PANTHER:PTHR13904	PANTHER:PTHR13904:SF0	InterPro:Prp31	InterPro:Prp31_C	SMART:SM00931
SUPFAM:SSF89124	UniParc:UPI000233F454	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:29914794..29922230

Molecular Weight (calculated)

53043.4 Da

IEP (calculated)

5.623

GRAVY (calculated)

-0.373

Length

486 amino acids

Sequence
(BLAST)

001: MATLADSFLA DLDELSDNEA EIPEDNDVDA ADMEEDVDGD LADLENLNYD DLDSVSKLQK TQRYTDVIQK VEEALNKKES EVLFQVVDIE DDPEYQLIVD
101: CNALSVDIEN EIVIIHNFIR DKYRLKFPEL ESLVHHPIDY ARVVKKIGNE MDLTLVDLEG LLPSAIIMVV SVTASTTTGK PLPEEVLSKT VEACDRALDL
201: DSAKKKVLDF VESRMGYIAP NLSAIVGSAV AAKLMGTAGG LASLAKMPAC NVQLLGAKKK NLAGFSTATS QFRVGYLEQT EIFQTTPPSL RMRACRLLAA
301: KSTLAARVDS IRGDPSGKTG RAFKDEIHKK IEKWQEPPPA KQPKPLPVPD SEPKKKRGGR RLRKMKERYA ITDMRKLANR MQFGVPEESS LGDGLGEGYG
401: MLGQAGSGKL RVSVGQSKLA AKVAKKFKEK NYGSSGATSG LTSSLAFTPV QGIELSNPQA HAHQLGSGTQ STYFSETGTF SKIKRT

Best Arabidopsis Sequence Match ( AT1G60170.1 )
(BLAST)

001: MATLEDSFLA DLDELSDNEA ELDENDGDVG KEEEDVDMDM ADLETLNYDD LDNVSKLQKS QRYADIMHKV EEALGKDSDG AEKGTVLEDD PEYKLIVDCN
101: QLSVDIENEI VIVHNFIKDK YKLKFQELES LVHHPIDYAC VVKKIGNETD LALVDLADLL PSAIIMVVSV TALTTKGSAL PEDVLQKVLE ACDRALDLDS
201: ARKKVLEFVE SKMGSIAPNL SAIVGSAVAA KLMGTAGGLS ALAKMPACNV QVLGHKRKNL AGFSSATSQS RVGYLEQTEI YQSTPPGLQA RAGRLVAAKS
301: TLAARVDATR GDPLGISGKA FREEIRKKIE KWQEPPPARQ PKPLPVPDSE PKKRRGGRRL RKMKERYQVT DMRKLANRMA FGTPEESSLG DGLGEGYGML
401: GQAGSNRLRV SSVPSKLKIN AKVAKKLKER QYAGGATTSG LTSSLAFTPV QGIELCNPQQ ALGLGSGTQS TYFSESGTFS KLKKI

Arabidopsis Description

PRP31Emb1220 [Source:UniProtKB/TrEMBL;Acc:A0A178WCJ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.