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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, secretory
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:mitochondrion, nucleus
PProwler:secretory
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 21132161
endoplasmic reticulum: 23041469
nucleus: 24385303
endoplasmic reticulum: 27224218
nucleus: 27291164
mitochondrion: 27780359
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 27780359 doi
G Mustafa, S Komatsu
Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 23041469 doi
S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa
National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp
msms PMID: 24385303 doi
S Komatsu, S Hiraga, MZ Nouri
National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba, 305-8518, Japan, skomatsu@affrc.go.jp.
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH29399 Soybean nucleus 96.4 97.28
Zm00001d034259_P001 Maize cytosol 21.94 82.99
Zm00001d038818_P001 Maize cytosol 42.99 82.7
Solyc05g055880.2.1 Tomato nucleus 73.2 79.34
Zm00001d007484_P001 Maize cytosol 48.2 78.13
PGSC0003DMT400015638 Potato cytosol 76.98 78.1
Solyc09g083080.2.1 Tomato nucleus 76.98 77.54
VIT_14s0030g01270.t01 Wine grape nucleus 79.5 77.14
PGSC0003DMT400060016 Potato cytosol 74.1 76.16
CDX80674 Canola cytosol 73.38 76.12
Bra009978.1-P Field mustard nucleus 72.84 75.42
CDX86179 Canola nucleus 72.84 75.42
CDY00004 Canola nucleus 72.66 75.37
CDY19706 Canola nucleus 72.48 75.33
AT3G05060.1 Thale cress cytosol 71.76 74.86
Bra036111.1-P Field mustard nucleus 72.12 74.81
Zm00001d011996_P002 Maize cytosol 41.01 73.79
AT5G27120.1 Thale cress cytosol 70.68 73.73
CDY52494 Canola nucleus 70.32 73.63
TraesCS2D01G120400.1 Wheat nucleus 74.1 73.57
HORVU2Hr1G020690.6 Barley cytosol 71.4 73.52
TraesCS2A01G119400.1 Wheat nucleus 73.92 73.39
TraesCS1B01G379200.1 Wheat cytosol 73.74 73.21
Bra020601.1-P Field mustard nucleus 64.21 73.16
GSMUA_Achr8P09940_001 Banana cytosol 76.26 72.11
Os03t0350100-02 Rice nucleus 73.56 72.01
GSMUA_Achr11P... Banana cytosol 75.72 71.97
Os03t0350300-01 Rice nucleus 73.2 71.65
HORVU4Hr1G041810.4 Barley cytosol 69.78 71.45
Zm00001d047481_P003 Maize plastid 72.12 71.35
Zm00001d029144_P004 Maize cytosol 72.12 71.1
KXG34017 Sorghum cytosol 72.12 70.6
CDY50583 Canola cytosol, mitochondrion, nucleus, plastid 66.55 70.48
KXG39385 Sorghum cytosol 72.12 70.47
TraesCS4A01G141500.1 Wheat nucleus 71.04 68.34
TraesCS2B01G139100.1 Wheat endoplasmic reticulum, plastid 73.74 67.55
AT5G27140.2 Thale cress cytosol 50.72 62.67
Zm00001d031027_P001 Maize plastid 54.68 51.44
Zm00001d036776_P001 Maize mitochondrion 53.96 48.78
KRH48644 Soybean nucleus 37.59 37.86
KRH57211 Soybean nucleus 37.05 37.45
KRH03927 Soybean nucleus 36.69 37.16
KRH07033 Soybean nucleus 17.63 20.16
KRG94405 Soybean nucleus 17.63 20.16
Protein Annotations
Gene3D:1.10.150.460Gene3D:1.10.246.90Gene3D:1.10.287.660EntrezGene:100775301MapMan:17.1.1.2.1.5.3EMBL:ACUP02007175
ProteinID:BAX25286.1ncoils:CoilEnsemblPlantsGene:GLYMA_12G040200GO:GO:0000154GO:GO:0003674GO:GO:0003676
GO:GO:0003723GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0005730GO:GO:0006139GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0030515
GO:GO:0031428GO:GO:0032040InterPro:Helix_hairpin_bin_sfUniProt:I1LQ02InterPro:IPR002687InterPro:IPR029012
EnsemblPlants:KRH24415ProteinID:KRH24415ProteinID:KRH24415.1InterPro:NOP5_NInterPro:NOSICInterPro:Nop_dom
InterPro:Nop_dom_sfPFAM:PF01798PFAM:PF08156PFscan:PS51358PANTHER:PTHR10894PANTHER:PTHR10894:SF1
SMART:SM00931SUPFAM:SSF89124UniParc:UPI000233CEDASEG:seg::
Description
hypothetical protein
Coordinates
chr12:-:2893314..2898275
Molecular Weight (calculated)
61451.1 Da
IEP (calculated)
9.625
GRAVY (calculated)
-0.567
Length
556 amino acids
Sequence
(BLAST)
001: MLVLFETPAG FALFKVLDEG KLSKVEDLWK NFSSADTARQ VVKLKAFSKF ENTSEALEAA TLLIDGKASK GLRKFLRVHC ENETLGVADS KLGNVIKEKL
101: KIDCIHNNAV MELMRGVRNQ LTELISGLAV QDMAPMSLGL SHSLSRYKLK FSAEKVDTMI VQAIGLLDDL DKELNTYAMR VREWYGWHFP ELTKIIQDNI
201: LYARAVKLMG DRVNAANLDF SEILPEEVEA ELKEASVISM GTEIGELDLA NIRELCDQVL SLSEYRAQLY DYLKSRMNTI APNLTAMVGE LVGARLIAHG
301: GSLLNLAKQP GSTVQILGAE KALFRALKTK HATPKYGLIY HASLIGQAAP KFKGKISRSL AAKTALAIRC DALGDSQDNT MGLENRAKLE ARLRNLEGKE
401: LGRFAGSAKG KPKIEAYDKD RKKGAGGLIT PAKTYNPSAD SVIGQMVNSA MDEDAQEPSV ADKKKEKKEK KEKKKKEKNE GDETVQADGD VGEEPEPEVV
501: KKEKKKKRKE TESAELQNGN DDNAGEKKKK RKKHAEKEES PEMPSKKKGK KKKSGD
Best Arabidopsis Sequence Match ( AT3G05060.1 )
(BLAST)
001: MVLVLYETAA GFALFKVKDE GKMANVEDLC KEFDTPDSAR KMVKLKAFEK FDNTSEALEA VAKLLEGAPS KGLRKFLKAN CQGETLAVAD SKLGNVIKEK
101: LKIDCIHNNA VMELLRGVRS QFTELISGLG DQDLAPMSLG LSHSLARYKL KFSSDKVDTM IIQAIGLLDD LDKELNTYAM RVREWYGWHF PELAKIISDN
201: ILYAKSVKLM GNRVNAAKLD FSEILADEIE ADLKDAAVIS MGTEVSDLDL LHIRELCDQV LSLSEYRAQL YDYLKSRMNT IAPNLTALVG ELVGARLISH
301: GGSLLNLSKQ PGSTVQILGA EKALFRALKT KHATPKYGLI FHASLVGQAA PKHKGKISRS LAAKTVLAIR VDALGDSQDN TMGLENRAKL EARLRNLEGK
401: DLGRLSGSSK GKPKIEVYNK DKKMGSGGLI TPAKTYNTAA DSLLGETSAK SEEPSKKKDK KKKKKVEEEK PEEEEPSEKK KKKKAEAETE AVVEVAKEEK
501: KKNKKKRKHE EEETTETPAK KKDKKEKKKK SKD
Arabidopsis Description
NOP5-2Probable nucleolar protein 5-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAB3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.