Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d034259_P001 | Maize | cytosol | 33.98 | 71.43 |
| Zm00001d007484_P001 | Maize | cytosol | 73.46 | 66.18 |
| Zm00001d047481_P003 | Maize | plastid | 89.0 | 48.93 |
| Zm00001d029144_P004 | Maize | cytosol | 89.0 | 48.76 |
| Zm00001d038818_P001 | Maize | cytosol | 45.31 | 48.44 |
| KXG34017 | Sorghum | cytosol | 89.0 | 48.42 |
| HORVU4Hr1G041810.4 | Barley | cytosol | 80.26 | 45.67 |
| Os03t0350300-01 | Rice | nucleus | 83.82 | 45.6 |
| Os03t0350100-02 | Rice | nucleus | 83.82 | 45.6 |
| Solyc05g055880.2.1 | Tomato | nucleus | 73.79 | 44.44 |
| TraesCS2D01G120400.1 | Wheat | nucleus | 79.29 | 43.75 |
| TraesCS1B01G379200.1 | Wheat | cytosol | 78.64 | 43.39 |
| TraesCS4A01G141500.1 | Wheat | nucleus | 80.91 | 43.25 |
| PGSC0003DMT400060016 | Potato | cytosol | 73.79 | 42.14 |
| CDY19706 | Canola | nucleus | 72.82 | 42.06 |
| CDY00004 | Canola | nucleus | 72.82 | 41.98 |
| AT3G05060.1 | Thale cress | cytosol | 72.17 | 41.84 |
| Bra036111.1-P | Field mustard | nucleus | 72.49 | 41.79 |
| CDX80674 | Canola | cytosol | 72.49 | 41.79 |
| Bra009978.1-P | Field mustard | nucleus | 72.49 | 41.71 |
| CDX86179 | Canola | nucleus | 72.49 | 41.71 |
| GSMUA_Achr11P... | Banana | cytosol | 78.96 | 41.71 |
| AT5G27120.1 | Thale cress | cytosol | 71.84 | 41.65 |
| KRH29399 | Soybean | nucleus | 73.79 | 41.38 |
| GSMUA_Achr8P09940_001 | Banana | cytosol | 78.64 | 41.33 |
| VIT_14s0030g01270.t01 | Wine grape | nucleus | 76.38 | 41.19 |
| CDY50583 | Canola | cytosol, mitochondrion, nucleus, plastid | 69.9 | 41.14 |
| KRH24415 | Soybean | nucleus | 73.79 | 41.01 |
| PGSC0003DMT400015638 | Potato | cytosol | 72.49 | 40.88 |
| Solyc09g083080.2.1 | Tomato | nucleus | 72.82 | 40.76 |
| CDY52494 | Canola | nucleus | 69.9 | 40.68 |
| TraesCS2B01G139100.1 | Wheat | endoplasmic reticulum, plastid | 78.96 | 40.2 |
| Bra020601.1-P | Field mustard | nucleus | 59.22 | 37.5 |
| Zm00001d031027_P001 | Maize | plastid | 70.23 | 36.72 |
| AT5G27140.2 | Thale cress | cytosol | 53.4 | 36.67 |
| Zm00001d036776_P001 | Maize | mitochondrion | 70.55 | 35.45 |
| Zm00001d029174_P005 | Maize | nucleus | 40.13 | 22.59 |
| Zm00001d047472_P002 | Maize | plastid | 40.45 | 21.97 |
| Zm00001d002716_P002 | Maize | nucleus | 20.06 | 12.78 |
Protein Annotations
| EnsemblPlants:Zm00001d011996_P002 | EnsemblPlants:Zm00001d011996_T002 | EnsemblPlantsGene:Zm00001d011996 | Gene3D:1.10.150.460 | Gene3D:1.10.246.90 | Gene3D:1.10.287.660 |
| InterPro:Helix_hairpin_bin_sf | InterPro:IPR002687 | InterPro:IPR029012 | InterPro:NOSIC | InterPro:Nop_dom | InterPro:Nop_dom_sf |
| PANTHER:PTHR10894 | PANTHER:PTHR10894:SF1 | PFAM:PF01798 | PFscan:PS51358 | ProteinID:AQK98545.1 | SMART:SM00931 |
| SUPFAM:SSF89124 | UniParc:UPI00084510D6 | UniProt:A0A1D6G5P2 | MapMan:35.1 | : | : |
Description
Probable nucleolar protein 5-1
Coordinates
chr8:-:166092087..166094640
Molecular Weight (calculated)
34615.0 Da
IEP (calculated)
9.173
GRAVY (calculated)
-0.285
Length
309 amino acids
Sequence
(BLAST)
(BLAST)
001: MELMRGLRNQ LTELITGFGA QDLGPMSLGL SHSLSRYKLK FSPEKACLIS VDTMIIQAIG LLDDLDKDLN TFAMRVREWY GWHFPELTKI VSDNIQYAKV
101: VKMMGNRANA VNLDFSEILS DEELETQLKE AAVISMGTEV SELDLLNIRE LCDQVLALSE YRAQLYDYLR SRMNTIAPNL QHWWLSPLRT KGCVSLYALF
201: KALKTKHSTP NYGLIYHASL IGKASQKHKG KISRSLAAKT TLAIRYDALG DGEDNSIGTE SLLKLETRLQ VLEGRELGKS AGSTKGKPKI EVYEKDRKNG
301: ARALTTPAK
101: VKMMGNRANA VNLDFSEILS DEELETQLKE AAVISMGTEV SELDLLNIRE LCDQVLALSE YRAQLYDYLR SRMNTIAPNL QHWWLSPLRT KGCVSLYALF
201: KALKTKHSTP NYGLIYHASL IGKASQKHKG KISRSLAAKT TLAIRYDALG DGEDNSIGTE SLLKLETRLQ VLEGRELGKS AGSTKGKPKI EVYEKDRKNG
301: ARALTTPAK
001: MAMYVIYESS SGYGLFEVHG LDEIGQNTEA VRTSVSDLSR FGRVVQLTAF HPFESALDAL NQVNAVSEGV MTDELRSFLE LNLPKVKEGK KPKFSLGLAE
101: PKLGSHIFEA TKIPCQSNEF VLELLRGVRQ HFDRFIKDLK PGDLEKSQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYARVSKMI DDKSKLTEDH IPMLTEVLGD EDKAKEVIEA GKASMGSDLS PLDLINVQTF AQKVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARYLANKCS IASRIDCFAD GATTAFGEKL
401: REQVEERLEF YDKGVAPRKN VDVMKEVIEN LKQEEEGKEP VDASVKKSKK KKAKGEEEEE VVAMEEDKSE KKKKKEKRKM ETAEENEKSE KKKTKKSKAG
501: GEEETDDGHS TKKKKKKSKS AE
101: PKLGSHIFEA TKIPCQSNEF VLELLRGVRQ HFDRFIKDLK PGDLEKSQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYARVSKMI DDKSKLTEDH IPMLTEVLGD EDKAKEVIEA GKASMGSDLS PLDLINVQTF AQKVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARYLANKCS IASRIDCFAD GATTAFGEKL
401: REQVEERLEF YDKGVAPRKN VDVMKEVIEN LKQEEEGKEP VDASVKKSKK KKAKGEEEEE VVAMEEDKSE KKKKKEKRKM ETAEENEKSE KKKTKKSKAG
501: GEEETDDGHS TKKKKKKSKS AE
Arabidopsis Description
NOP56At1g56110/T6H22_9 [Source:UniProtKB/TrEMBL;Acc:Q9SGT7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.