Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d034259_P001 | Maize | cytosol | 21.78 | 66.67 |
| Zm00001d038818_P001 | Maize | cytosol | 39.11 | 60.9 |
| Zm00001d007484_P001 | Maize | cytosol | 45.78 | 60.06 |
| CDX80674 | Canola | cytosol | 70.67 | 59.33 |
| CDY19706 | Canola | nucleus | 70.0 | 58.88 |
| CDY00004 | Canola | nucleus | 70.0 | 58.77 |
| Bra009978.1-P | Field mustard | nucleus | 70.0 | 58.66 |
| CDX86179 | Canola | nucleus | 70.0 | 58.66 |
| Bra036111.1-P | Field mustard | nucleus | 69.56 | 58.4 |
| AT5G27120.1 | Thale cress | cytosol | 68.67 | 57.97 |
| CDY52494 | Canola | nucleus | 67.78 | 57.44 |
| Bra020601.1-P | Field mustard | nucleus | 60.22 | 55.53 |
| AT3G05060.1 | Thale cress | cytosol | 65.56 | 55.35 |
| Solyc05g055880.2.1 | Tomato | nucleus | 62.89 | 55.17 |
| CDY50583 | Canola | cytosol, mitochondrion, nucleus, plastid | 62.67 | 53.71 |
| Zm00001d011996_P002 | Maize | cytosol | 36.67 | 53.4 |
| PGSC0003DMT400060016 | Potato | cytosol | 63.33 | 52.68 |
| VIT_14s0030g01270.t01 | Wine grape | nucleus | 66.89 | 52.53 |
| PGSC0003DMT400015638 | Potato | cytosol | 63.78 | 52.37 |
| Solyc09g083080.2.1 | Tomato | nucleus | 63.56 | 51.81 |
| KRH29399 | Soybean | nucleus | 62.89 | 51.36 |
| HORVU2Hr1G020690.6 | Barley | cytosol | 61.33 | 51.11 |
| KRH24415 | Soybean | nucleus | 62.67 | 50.72 |
| TraesCS2D01G120400.1 | Wheat | nucleus | 62.89 | 50.54 |
| HORVU4Hr1G041810.4 | Barley | cytosol | 60.89 | 50.46 |
| TraesCS2A01G119400.1 | Wheat | nucleus | 62.67 | 50.36 |
| TraesCS1B01G379200.1 | Wheat | cytosol | 62.44 | 50.18 |
| Os03t0350100-02 | Rice | nucleus | 62.0 | 49.12 |
| Os03t0350300-01 | Rice | nucleus | 62.0 | 49.12 |
| Zm00001d029144_P004 | Maize | cytosol | 60.67 | 48.4 |
| Zm00001d047481_P003 | Maize | plastid | 60.44 | 48.4 |
| GSMUA_Achr11P... | Banana | cytosol | 62.44 | 48.03 |
| KXG39385 | Sorghum | cytosol | 60.67 | 47.98 |
| GSMUA_Achr8P09940_001 | Banana | cytosol | 62.44 | 47.79 |
| KXG34017 | Sorghum | cytosol | 60.22 | 47.71 |
| TraesCS4A01G141500.1 | Wheat | nucleus | 60.67 | 47.23 |
| TraesCS2B01G139100.1 | Wheat | endoplasmic reticulum, plastid | 62.22 | 46.13 |
| Zm00001d031027_P001 | Maize | plastid | 50.0 | 38.07 |
| Zm00001d036776_P001 | Maize | mitochondrion | 48.67 | 35.61 |
| AT1G56110.1 | Thale cress | nucleus | 37.78 | 32.57 |
| AT3G12860.1 | Thale cress | nucleus | 36.0 | 32.46 |
| AT1G60170.1 | Thale cress | nucleus | 19.33 | 17.94 |
| AT1G70400.3 | Thale cress | cytosol | 8.22 | 13.5 |
Protein Annotations
| Gene3D:1.10.150.460 | Gene3D:1.10.246.90 | Gene3D:1.10.287.660 | MapMan:17.1.1.2.1.5.3 | EntrezGene:832772 | ProteinID:AAB61074.1 |
| ProteinID:AED93654.1 | ProteinID:ANM68536.1 | ArrayExpress:AT5G27140 | EnsemblPlantsGene:AT5G27140 | RefSeq:AT5G27140 | TAIR:AT5G27140 |
| RefSeq:AT5G27140-TAIR-G | EnsemblPlants:AT5G27140.2 | Unigene:At.55031 | GO:GO:0000154 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005730 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0030515 |
| GO:GO:0031428 | GO:GO:0032040 | GO:GO:0042254 | InterPro:Helix_hairpin_bin_sf | InterPro:IPR002687 | InterPro:IPR029012 |
| InterPro:NOP5_N | InterPro:NOSIC | RefSeq:NP_001330282.1 | RefSeq:NP_198066.1 | InterPro:Nop_dom | InterPro:Nop_dom_sf |
| UniProt:O04656 | PFAM:PF01798 | PFAM:PF08156 | PFscan:PS51358 | PANTHER:PTHR10894 | PANTHER:PTHR10894:SF1 |
| SMART:SM00931 | SUPFAM:SSF89124 | TMHMM:TMhelix | UniParc:UPI000150AF6E | SEG:seg | : |
Description
NOP5-3Putative nucleolar protein 5-3 [Source:UniProtKB/Swiss-Prot;Acc:O04656]
Coordinates
chr5:+:9548542..9550374
Molecular Weight (calculated)
49938.2 Da
IEP (calculated)
4.571
GRAVY (calculated)
-0.165
Length
450 amino acids
Sequence
(BLAST)
(BLAST)
001: MLVLFETSGG FALFKVLDEG KLSNVEDLGT EFYSAESARR MGLHKFLKNN CDDGEILAVA DPKLGDIITE KLDIECVHND AVMELLRGVR SQLTELLSGL
101: DDNDLAPVSL ELSHILARYK LKITSDKVET MIILSISLLD DLDKELNTYT TSVCELYGLH FPELANIVQD NILYAKVVKL MGNRINAATL DFSEILADEV
201: EAELKEASMV STRTEVSDLD LMHIQELCDQ VLSIAEDKTL LCDDLKNKMN KIAPNLTALV GELVGARLIS HCGSLWNLSK LPWSTIQILG AEKTLYKALK
301: TKQATPKYGL IYHAPLVRQA APENKGKIAR SLAAKSALAI RCDAFGNGQD NTMGVESRLK LEARLRNLEG GDLGACEEEE EVNDKDTKKE ADDEEEPKTE
401: ECSKKRKKEA ELETVEDPAK KSKQEGVTGL LLLMLLISLI YFFSVNQLLW
101: DDNDLAPVSL ELSHILARYK LKITSDKVET MIILSISLLD DLDKELNTYT TSVCELYGLH FPELANIVQD NILYAKVVKL MGNRINAATL DFSEILADEV
201: EAELKEASMV STRTEVSDLD LMHIQELCDQ VLSIAEDKTL LCDDLKNKMN KIAPNLTALV GELVGARLIS HCGSLWNLSK LPWSTIQILG AEKTLYKALK
301: TKQATPKYGL IYHAPLVRQA APENKGKIAR SLAAKSALAI RCDAFGNGQD NTMGVESRLK LEARLRNLEG GDLGACEEEE EVNDKDTKKE ADDEEEPKTE
401: ECSKKRKKEA ELETVEDPAK KSKQEGVTGL LLLMLLISLI YFFSVNQLLW
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.