Factsheet for HORVU4Hr1G041810.4

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038818_P001	Maize	cytosol	49.36	92.73
Zm00001d034259_P001	Maize	cytosol	24.31	89.8
TraesCS4A01G141500.1	Wheat	nucleus	93.74	88.06
Zm00001d007484_P001	Maize	cytosol	54.51	86.3
Os03t0350100-02	Rice	nucleus	87.48	83.63
Os03t0350300-01	Rice	nucleus	86.92	83.1
Zm00001d029144_P004	Maize	cytosol	85.45	82.27
Zm00001d047481_P003	Maize	plastid	85.08	82.21
KXG39385	Sorghum	cytosol	85.82	81.9
KXG34017	Sorghum	cytosol	85.45	81.69
HORVU2Hr1G020690.6	Barley	cytosol	80.85	81.3
Zm00001d011996_P002	Maize	cytosol	45.67	80.26
Solyc05g055880.2.1	Tomato	nucleus	71.45	75.63
PGSC0003DMT400060016	Potato	cytosol	73.3	73.57
GSMUA_Achr8P09940_001	Banana	cytosol	78.82	72.79
GSMUA_Achr11P...	Banana	cytosol	78.27	72.65
PGSC0003DMT400015638	Potato	cytosol	73.11	72.45
CDX80674	Canola	cytosol	71.09	72.01
Solyc09g083080.2.1	Tomato	nucleus	72.93	71.74
CDY19706	Canola	nucleus	70.35	71.4
VIT_14s0030g01270.t01	Wine grape	nucleus	75.14	71.2
CDX86179	Canola	nucleus	70.35	71.14
Bra009978.1-P	Field mustard	nucleus	70.35	71.14
CDY00004	Canola	nucleus	70.17	71.08
Bra036111.1-P	Field mustard	nucleus	69.8	70.71
KRH29399	Soybean	nucleus	71.64	70.6
AT5G27120.1	Thale cress	cytosol	68.69	69.98
AT3G05060.1	Thale cress	cytosol	68.69	69.98
KRH24415	Soybean	nucleus	71.45	69.78
CDY52494	Canola	nucleus	68.14	69.68
Bra020601.1-P	Field mustard	nucleus	61.88	68.85
CDY50583	Canola	cytosol, mitochondrion, nucleus, plastid	65.75	68.0
AT5G27140.2	Thale cress	cytosol	50.46	60.89
Zm00001d031027_P001	Maize	plastid	61.33	56.35
Zm00001d036776_P001	Maize	mitochondrion	61.14	53.98
HORVU1Hr1G083960.6	Barley	nucleus	37.75	36.41
HORVU2Hr1G022140.3	Barley	nucleus	37.2	36.07
HORVU2Hr1G022110.2	Barley	plastid	36.1	35.83
HORVU2Hr1G022120.1	Barley	mitochondrion	33.15	35.23

Protein Annotations

EnsemblPlants:HORVU4Hr1G041810.4	EnsemblPlantsGene:HORVU4Hr1G041810	Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	InterPro:Helix_hairpin_bin_sf
InterPro:IPR002687	InterPro:IPR029012	InterPro:NOP5_N	InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf
PANTHER:PTHR10894	PANTHER:PTHR10894:SF1	PFAM:PF01798	PFAM:PF08156	PFscan:PS51358	SEG:seg
SMART:SM00931	SUPFAM:SSF89124	UniParc:UPI000B47C136	UniProt:A0A287NV65	MapMan:17.1.1.2.1.5.3	:

Description

No Description!

Coordinates

chrchr4H:-:329188145..329194932

Molecular Weight (calculated)

59934.0 Da

IEP (calculated)

9.629

GRAVY (calculated)

-0.522

Length

543 amino acids

Sequence
(BLAST)

001: MLVLFETPAG FALFKVLNES KLDKVEDLWK EFTTSNSARK VVELKAFNKF ENTSDALSAA TLIIDSKPTK GLRKFLQKHC DGETLAVADS KLGNAIKEKL
101: KIDCVHNSAV MELMRGLRNQ LSELISGLGT QDLGPMSLGL SHSLSRYKLK FSPEKVDTMI IQAIGLLDDL DKELNTYAMR VREWYGWHFP ELTKIVTDNI
201: QYAKVVKLMG NRTNAVNLDF SEILTDDEVE AQLKEAAVIS MGTEVNDLDL SNIRELCDQV LALSEYRSQL YDYLKSRMNT IAPNLTALVG ELVGARLISH
301: GGSLVNLAKQ PGSTIQILGA EKALFRALKT KHATPKYGLI YHASLIGQAA PKHKGKISRS LASKAALAIR YDALGDGEHN SLGVESRLKL ETWLRVLEGK
401: ELGRSAGSTK GKPKIEVYEK DRKNGPGLIA PAKTYNPSAD LVLAQSMEET PKKPDAASKK RKHDDAVTAP STELAEEAIQ EDGDQEGKKK KKKKSKDVEE
501: SPAVDTKSDK KKKRKSKGTE EEVAPVETES GKNDKKKKKR QAD

Best Arabidopsis Sequence Match ( AT1G56110.1 )
(BLAST)

001: MAMYVIYESS SGYGLFEVHG LDEIGQNTEA VRTSVSDLSR FGRVVQLTAF HPFESALDAL NQVNAVSEGV MTDELRSFLE LNLPKVKEGK KPKFSLGLAE
101: PKLGSHIFEA TKIPCQSNEF VLELLRGVRQ HFDRFIKDLK PGDLEKSQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYARVSKMI DDKSKLTEDH IPMLTEVLGD EDKAKEVIEA GKASMGSDLS PLDLINVQTF AQKVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARYLANKCS IASRIDCFAD GATTAFGEKL
401: REQVEERLEF YDKGVAPRKN VDVMKEVIEN LKQEEEGKEP VDASVKKSKK KKAKGEEEEE VVAMEEDKSE KKKKKEKRKM ETAEENEKSE KKKTKKSKAG
501: GEEETDDGHS TKKKKKKSKS AE

Arabidopsis Description

NOP56At1g56110/T6H22_9 [Source:UniProtKB/TrEMBL;Acc:Q9SGT7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.