Factsheet for Zm00001d031027_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034259_P001	Maize	cytosol	23.52	94.56
Zm00001d038818_P001	Maize	cytosol	45.69	93.43
Zm00001d036776_P001	Maize	mitochondrion	95.94	92.2
Zm00001d007484_P001	Maize	cytosol	49.41	85.13
Zm00001d011996_P002	Maize	cytosol	36.72	70.23
Zm00001d047481_P003	Maize	plastid	60.58	63.7
Zm00001d029144_P004	Maize	cytosol	60.24	63.12
KXG39385	Sorghum	cytosol	59.73	62.04
HORVU4Hr1G041810.4	Barley	cytosol	56.35	61.33
Solyc05g055880.2.1	Tomato	nucleus	52.79	60.82
Os03t0350300-01	Rice	nucleus	57.53	59.86
Os03t0350100-02	Rice	nucleus	57.53	59.86
TraesCS2D01G120400.1	Wheat	nucleus	55.5	58.57
TraesCS1B01G379200.1	Wheat	cytosol	55.16	58.21
PGSC0003DMT400060016	Potato	cytosol	52.79	57.67
TraesCS4A01G141500.1	Wheat	nucleus	56.18	57.44
TraesCS2B01G139100.1	Wheat	endoplasmic reticulum, plastid	58.21	56.67
PGSC0003DMT400015638	Potato	cytosol	52.45	56.57
Solyc09g083080.2.1	Tomato	nucleus	52.79	56.52
GSMUA_Achr11P...	Banana	cytosol	54.99	55.56
VIT_14s0030g01270.t01	Wine grape	nucleus	53.47	55.15
KRH29399	Soybean	nucleus	51.27	54.99
GSMUA_Achr8P09940_001	Banana	cytosol	54.65	54.93
KRH24415	Soybean	nucleus	51.44	54.68
AT3G05060.1	Thale cress	cytosol	48.9	54.22
CDY19706	Canola	nucleus	48.9	54.02
CDY00004	Canola	nucleus	48.9	53.92
CDX80674	Canola	cytosol	48.9	53.92
Bra036111.1-P	Field mustard	nucleus	48.73	53.73
CDX86179	Canola	nucleus	48.73	53.63
Bra009978.1-P	Field mustard	nucleus	48.73	53.63
AT5G27120.1	Thale cress	cytosol	48.05	53.28
CDY52494	Canola	nucleus	47.04	52.35
CDY50583	Canola	cytosol, mitochondrion, nucleus, plastid	45.18	50.86
Bra020601.1-P	Field mustard	nucleus	41.79	50.61
AT5G27140.2	Thale cress	cytosol	38.07	50.0
Zm00001d029174_P005	Maize	nucleus	28.76	30.97
Zm00001d047472_P002	Maize	plastid	28.76	29.88
Zm00001d002716_P002	Maize	nucleus	12.52	15.26

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	MapMan:17.1.1.2.1.5.3	Gene3D:3.40.50.1440	UniProt:A0A1D6KFZ4
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0016787	InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687
InterPro:IPR029012	InterPro:IPR036525	InterPro:NOP5_N	InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf
ProteinID:ONM02008.1	PFAM:PF01798	PFAM:PF08156	PFscan:PS51358	PANTHER:PTHR10894	PANTHER:PTHR10894:SF1
SMART:SM00931	SUPFAM:SSF52490	SUPFAM:SSF89124	InterPro:Tubulin/FtsZ_GTPase_sf	UniParc:UPI00084472DE	EnsemblPlantsGene:Zm00001d031027
EnsemblPlants:Zm00001d031027_P001	EnsemblPlants:Zm00001d031027_T001	SEG:seg	:	:	:

Description

Probable nucleolar protein 5-1

Coordinates

chr1:-:174118447..174125812

Molecular Weight (calculated)

65691.0 Da

IEP (calculated)

8.088

GRAVY (calculated)

-0.276

Length

591 amino acids

Sequence
(BLAST)

001: MDSVRSGPFG QIFRPDNFVF QSGAGNNWAK GHYTEGAGNN RNRTRHPRPS TTYLHPLSAS DVGAPTGNRQ VSLWGSSTKE ITCDTLLQKV SEENQLHRHL
101: CCAAAAALSI QVIFTNDCYV FALCPFAGPQ FQMNLKDEET TVETDSTQAP ISQVLYTFHS VHHSMPKLEY SSSKMDMEKE IRKQVDDAIA KAKLDEASRA
201: LLMKVLEDAT QDVVQRQAKM LVLFETPAGF TLFKVLDEGK LDKVEDLWKE FTTSDSARKV VELKAFNKFE NTSDALSAAT LIIDSKPSKG LRKFLQKHCE
301: GETLVVADSK LGNAIKEKLL MRGLRNQLTE LITGLGAQDL GPMSLGLSHS LSRYKLKFSP EKVDTMIIQD IGLLDDLDKE LNTYAMRVRE WYGWHFPELT
401: KIVTDNIQYA KVVKMMGNRV NAVNLDFSKI LSDEELETQL KEAAIISMGT EVSDLDLSNI RELCDQVLAI SEYRAQLYDY LRSRMNTIAP NLTALVGELV
501: GARLIAHGGS LLNLAKQPGS TIHILGAEKA LFRALKTKHS TPKYGLIYHA SLIGKASQKH KGKISHSLAA KTALAIRYDA LGDAKLIKTE Y

Best Arabidopsis Sequence Match ( AT1G56110.1 )
(BLAST)

001: MAMYVIYESS SGYGLFEVHG LDEIGQNTEA VRTSVSDLSR FGRVVQLTAF HPFESALDAL NQVNAVSEGV MTDELRSFLE LNLPKVKEGK KPKFSLGLAE
101: PKLGSHIFEA TKIPCQSNEF VLELLRGVRQ HFDRFIKDLK PGDLEKSQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYARVSKMI DDKSKLTEDH IPMLTEVLGD EDKAKEVIEA GKASMGSDLS PLDLINVQTF AQKVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARYLANKCS IASRIDCFAD GATTAFGEKL
401: REQVEERLEF YDKGVAPRKN VDVMKEVIEN LKQEEEGKEP VDASVKKSKK KKAKGEEEEE VVAMEEDKSE KKKKKEKRKM ETAEENEKSE KKKTKKSKAG
501: GEEETDDGHS TKKKKKKSKS AE

Arabidopsis Description

NOP56At1g56110/T6H22_9 [Source:UniProtKB/TrEMBL;Acc:Q9SGT7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.