CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19706	Canola	nucleus	99.25	99.44
Bra036111.1-P	Field mustard	nucleus	98.51	98.51
CDX80674	Canola	cytosol	94.78	94.78
CDX86179	Canola	nucleus	93.28	93.11
CDY52494	Canola	nucleus	89.74	90.58
AT5G27120.1	Thale cress	cytosol	88.62	89.12
CDY50583	Canola	cytosol, mitochondrion, nucleus, plastid	85.82	87.62
Zm00001d034259_P001	Maize	cytosol	22.57	82.31
Zm00001d038818_P001	Maize	cytosol	42.16	78.2
Zm00001d007484_P001	Maize	cytosol	49.81	77.84
Solyc05g055880.2.1	Tomato	nucleus	72.95	76.22
PGSC0003DMT400015638	Potato	cytosol	75.75	74.09
PGSC0003DMT400060016	Potato	cytosol	74.63	73.94
KRH29399	Soybean	nucleus	75.19	73.14
Zm00001d011996_P002	Maize	cytosol	41.98	72.82
KRH24415	Soybean	nucleus	75.37	72.66
Solyc09g083080.2.1	Tomato	nucleus	74.81	72.64
VIT_14s0030g01270.t01	Wine grape	nucleus	77.61	72.6
TraesCS2A01G119400.1	Wheat	nucleus	74.25	71.07
TraesCS2D01G120400.1	Wheat	nucleus	73.88	70.71
TraesCS1B01G379200.1	Wheat	cytosol	73.69	70.54
HORVU2Hr1G020690.6	Barley	cytosol	70.71	70.19
HORVU4Hr1G041810.4	Barley	cytosol	71.08	70.17
AT5G27140.2	Thale cress	cytosol	58.77	70.0
Os03t0350100-02	Rice	nucleus	73.13	69.01
Os03t0350300-01	Rice	nucleus	73.13	69.01
Zm00001d047481_P003	Maize	plastid	71.08	67.79
Zm00001d029144_P004	Maize	cytosol	71.27	67.73
GSMUA_Achr11P...	Banana	cytosol	73.69	67.52
KXG39385	Sorghum	cytosol	71.27	67.14
GSMUA_Achr8P09940_001	Banana	cytosol	73.51	67.01
KXG34017	Sorghum	cytosol	70.9	66.9
TraesCS4A01G141500.1	Wheat	nucleus	72.01	66.78
TraesCS2B01G139100.1	Wheat	endoplasmic reticulum, plastid	73.69	65.07
Zm00001d031027_P001	Maize	plastid	53.92	48.9
CDX98286	Canola	cytosol	11.94	47.41
Zm00001d036776_P001	Maize	mitochondrion	53.36	46.5
CDY63487	Canola	nucleus	40.67	41.84
CDY59117	Canola	nucleus	40.11	41.75
CDX82572	Canola	nucleus	38.99	41.39
CDY57300	Canola	nucleus	38.99	41.39
CDY42406	Canola	nucleus	39.93	41.23
CDY10510	Canola	nucleus	39.18	40.94
CDY44398	Canola	cytosol	32.84	39.55
CDY04069	Canola	cytosol	32.46	39.01
CDY08398	Canola	cytosol	1.49	33.33
CDY52879	Canola	nucleus	18.1	30.03
CDY08399	Canola	endoplasmic reticulum, plasma membrane	9.51	28.81
CDY72546	Canola	nucleus	16.04	20.48
CDY04340	Canola	plasma membrane	17.16	19.37
CDY24519	Canola	nucleus	17.54	19.34
CDY54131	Canola	mitochondrion	17.54	19.03
CDY39628	Canola	nucleus	15.67	18.42
CDY36542	Canola	nucleus	14.18	18.14

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	MapMan:17.1.1.2.1.5.3	EnsemblPlants:CDY00004	ProteinID:CDY00004
ProteinID:CDY00004.1	ncoils:Coil	EnsemblPlantsGene:GSBRNA2T00109477001	InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687	InterPro:IPR029012
InterPro:NOP5_N	InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf	PFAM:PF01798	PFAM:PF08156
PFscan:PS51358	PANTHER:PTHR10894	PANTHER:PTHR10894:SF1	SMART:SM00931	SUPFAM:SSF89124	UniParc:UPI0004EDB545
SEG:seg	:	:	:	:	:

Description

BnaC09g02970D

Coordinates

chrLK031916:-:196927..199997

Molecular Weight (calculated)

59077.4 Da

IEP (calculated)

9.722

GRAVY (calculated)

-0.551

Length

536 amino acids

Sequence
(BLAST)

001: MLLLFETPAG FAVFKVLDEG KLSNVEDLGN VFSSAESARK MVKLKAFDKF DNTSEALEAV AKLLEGTPSK GLRKFLKANC EGETLAVADS KLGNIIKEKL
101: KIDCVHNNAV MELLRGVRSQ LTELISGLGD QDLAPMSLGL SHSLARYKLK FSSDKVDTMI IQAIGLLDDL DKELNTYAMR VREWYGWHFP ELAKIISDNI
201: LYAKSVKLMG NRINAAKLDF SEILADEVEA ELKEAAVISM GTEVSDLDLM HIRELCDQVL SLAEYRAQLY DYLKSRMNTI APNLTSLVGE LVGARLISHG
301: GSLLNLSKQP GSTIQILGAE KALFRALKTK HATPKYGLIY HASVVGQAAP KHKGKISRSL AAKAALAIRC DALGDGEDNS MGVENRLKLE ARLRSLEGKD
401: LGRLSGSAKG KPKVEVYDKD KKSGSGGLIT PAKTYNTAAD SLIGQTSKAE ESVKEKKDKK KKKKKADAEE EEEAKTEEPS KKKSKKKKAE VEPETEEPKT
501: EEPSKKKKKR KHEEEESEMP AKKKEKKDKK KKKSEA

Best Arabidopsis Sequence Match ( AT5G27120.1 )
(BLAST)

001: MLILFETPGG FAIFKVLNEG KLSNVEDLGN EFSTAKLARK MVKLVAFDKF DNTAEALEAV AKLLEGTPSK GLRKFLKANC VGETLAVADS KLGNIIKEKL
101: KIVCVHNNAV MELLRGIRSQ LTELISGLGD QDLGPMSLGL SHSLARYKLK FSSDKVDTMI IQAIGLLDDL DKELNTYAMR VREWFGWHFP ELAKIVQDNI
201: LYAKAVKLMG NRINAAKLDF SEILADEIEA ELKEAAVISM GTEVSDLDLL HIRELCDQVL SLAEYRAQLY DYLKSRMNTI APNLTALVGE LVGARLISHG
301: GSLLNLAKQP GSTVQILGAE KALFRALKTK HATPKYGLIF HASVVGQAAP KNKGKISRSL AAKSVLAIRC DALGDSQDNT MGVENRLKLE ARLRTLEGKD
401: LGRLSGSAKG KPKIEVYDKD KKKGSGGLIT PAKTYNTAAD SLLQTPTVDS ENGVKEKKDK KKKKKADDEE EAKTEEPSKK KSNKKKTEAE PETAEEPAKK
501: EKKKKRKHEE EETEMPAKKK EKSEKKKKKK TEV

Arabidopsis Description

NOP5-1Probable nucleolar protein 5-1 [Source:UniProtKB/Swiss-Prot;Acc:O04658]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.