CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36542	Canola	nucleus	84.65	92.12
CDY72546	Canola	nucleus	61.62	66.9
CDY04340	Canola	plasma membrane	67.11	64.42
KRH07033	Soybean	nucleus	67.11	62.96
CDY24519	Canola	nucleus	67.11	62.96
KRG94405	Soybean	nucleus	66.89	62.76
Os04t0555400-01	Rice	nucleus	66.23	62.4
CDY54131	Canola	mitochondrion	67.54	62.35
Zm00001d002716_P002	Maize	nucleus	65.79	61.86
OQU82106	Sorghum	nucleus	65.57	61.78
Os07t0141600-01	Rice	nucleus	65.35	61.57
TraesCS1A01G376100.1	Wheat	nucleus	65.35	61.44
TraesCS1D01G383400.2	Wheat	nucleus	65.35	61.44
TraesCS2B01G046400.1	Wheat	nucleus	63.82	61.13
GSMUA_Achr3P06150_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	65.79	60.98
VIT_01s0026g00230.t01	Wine grape	cytosol	64.69	57.96
TraesCS1B01G396600.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	65.13	57.56
TraesCS2B01G267700.1	Wheat	cytosol	56.14	54.7
GSMUA_Achr9P14550_001	Banana	plasma membrane	50.0	52.17
KXG30826	Sorghum	nucleus	49.78	51.95
Os02t0730100-00	Rice	extracellular	15.79	48.98
CDX98286	Canola	cytosol	5.7	19.26
CDY52494	Canola	nucleus	18.86	16.2
CDX80674	Canola	cytosol	18.86	16.04
CDX86179	Canola	nucleus	18.86	16.01
CDY19706	Canola	nucleus	18.42	15.7
CDY00004	Canola	nucleus	18.42	15.67
CDY50583	Canola	cytosol, mitochondrion, nucleus, plastid	17.76	15.43
CDY63487	Canola	nucleus	17.54	15.36
CDY59117	Canola	nucleus	17.11	15.15
CDY42406	Canola	nucleus	16.89	14.84
CDY10510	Canola	nucleus	16.67	14.81
CDY57300	Canola	nucleus	16.23	14.65
CDX82572	Canola	nucleus	16.01	14.46
CDY44398	Canola	cytosol	13.82	14.16
CDY52879	Canola	nucleus	9.87	13.93
CDY04069	Canola	cytosol	13.38	13.68
CDY08399	Canola	endoplasmic reticulum, plasma membrane	2.19	5.65
CDY08398	Canola	cytosol	0.22	4.17

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	MapMan:35.1	GO:A0A078HSA3	UniProt:A0A078HSA3
EnsemblPlants:CDY39628	ProteinID:CDY39628	ProteinID:CDY39628.1	GO:GO:0000244	GO:GO:0000398	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0046540	EnsemblPlantsGene:GSBRNA2T00068194001	InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687
InterPro:IPR029012	InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf	PFAM:PF01798	PFAM:PF09785
PFscan:PS51358	PANTHER:PTHR13904	InterPro:Prp31	InterPro:Prp31_C	SMART:SM00931	SUPFAM:SSF89124
UniParc:UPI0004EE9A6F	SEG:seg	:	:	:	:

Description

BnaC05g11570DBnaC05g11570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HSA3]

Coordinates

chrLK032453:+:146364..147902

Molecular Weight (calculated)

49719.6 Da

IEP (calculated)

8.701

GRAVY (calculated)

-0.376

Length

456 amino acids

Sequence
(BLAST)

001: MAELEDSFLA EIDELSDYEE AGFEENAGSY GGDIAMDMSD LETLKSDDDL DSVSKLQKTQ RYADIMNKVE DALGKDSYGA LSEDDPLYKL IVDCNKLSVD
101: IENEIVTVHG FIRSKYRLRF PELESFVHHA IEYASVVKQI GDAKDLTLVP LEGLSATRTT VSILLTASTT KGKPLPSDVL QKTLEACDRA IELDSALKKI
201: LAFVETKMGC IAPNLSAVVG SAKRKNLDGF SAVTTQSRVG YLEHTEIFQN TPPGLRSRAI KLLAGKSTLA ARVDACRGDP SGTNGRSLRE EIQKKIDKLQ
301: EPGVARQPKP LPVPDMTSKK KRGGRRLRKM KERYAVTEMR KLSNRVAFGV ACEESSLGDG LGEGYGMLGQ GGSKRLRVSS VPSKLKLGAK LEKKLKERQY
401: TSGVATTGTS GFMTSRLAFT PVQGIELCNP GAVKLFSGTQ STYFSESGTF SKIKKI

Best Arabidopsis Sequence Match ( AT1G60170.1 )
(BLAST)

001: MATLEDSFLA DLDELSDNEA ELDENDGDVG KEEEDVDMDM ADLETLNYDD LDNVSKLQKS QRYADIMHKV EEALGKDSDG AEKGTVLEDD PEYKLIVDCN
101: QLSVDIENEI VIVHNFIKDK YKLKFQELES LVHHPIDYAC VVKKIGNETD LALVDLADLL PSAIIMVVSV TALTTKGSAL PEDVLQKVLE ACDRALDLDS
201: ARKKVLEFVE SKMGSIAPNL SAIVGSAVAA KLMGTAGGLS ALAKMPACNV QVLGHKRKNL AGFSSATSQS RVGYLEQTEI YQSTPPGLQA RAGRLVAAKS
301: TLAARVDATR GDPLGISGKA FREEIRKKIE KWQEPPPARQ PKPLPVPDSE PKKRRGGRRL RKMKERYQVT DMRKLANRMA FGTPEESSLG DGLGEGYGML
401: GQAGSNRLRV SSVPSKLKIN AKVAKKLKER QYAGGATTSG LTSSLAFTPV QGIELCNPQQ ALGLGSGTQS TYFSESGTFS KLKKI

Arabidopsis Description

PRP31Emb1220 [Source:UniProtKB/TrEMBL;Acc:A0A178WCJ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.