CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82572	Canola	nucleus	98.42	98.42
AT3G12860.1	Thale cress	nucleus	91.88	92.99
CDY08398	Canola	cytosol	4.16	87.5
CDY59117	Canola	nucleus	88.32	86.6
CDY63487	Canola	nucleus	89.31	86.56
CDY42406	Canola	nucleus	88.51	86.13
CDY10510	Canola	nucleus	87.13	85.77
CDX98286	Canola	cytosol	21.39	80.0
CDY04069	Canola	cytosol	65.74	74.44
CDY44398	Canola	cytosol	65.15	73.93
Os07t0661800-01	Rice	nucleus	45.54	73.48
GSMUA_Achr5P08210_001	Banana	nucleus	76.24	69.24
CDY52879	Canola	nucleus	43.76	68.42
GSMUA_AchrUn_...	Banana	nucleus	74.85	67.74
EER92268	Sorghum	nucleus	73.47	67.45
Zm00001d029174_P005	Maize	nucleus	73.27	67.4
TraesCS2A01G125500.1	Wheat	nucleus	71.88	67.35
TraesCS2B01G148000.1	Wheat	nucleus	71.88	67.22
TraesCS2D01G128600.1	Wheat	nucleus	71.68	67.16
Os03t0352300-01	Rice	nucleus	71.49	65.4
TraesCS1A01G379300.1	Wheat	nucleus	70.89	65.33
TraesCS1D01G386500.1	Wheat	nucleus	70.89	65.33
TraesCS1B01G401000.1	Wheat	nucleus	70.89	65.21
Zm00001d047472_P002	Maize	plastid	73.07	64.85
HORVU2Hr1G022140.3	Barley	nucleus	70.89	63.93
HORVU1Hr1G083960.6	Barley	nucleus	70.5	63.23
EER97682	Sorghum	endoplasmic reticulum	69.9	62.48
TraesCS2B01G147900.1	Wheat	plastid	56.04	61.12
HORVU2Hr1G022110.2	Barley	plastid	65.74	60.69
TraesCS2D01G128500.1	Wheat	plastid	55.84	60.65
TraesCS2A01G125400.1	Wheat	cytosol, plastid	55.05	59.91
HORVU2Hr1G022120.1	Barley	mitochondrion	58.81	58.12
CDY08399	Canola	endoplasmic reticulum, plasma membrane	18.81	53.67
CDY52494	Canola	nucleus	42.38	40.3
CDY50583	Canola	cytosol, mitochondrion, nucleus, plastid	41.58	40.0
CDX86179	Canola	nucleus	41.98	39.48
CDX80674	Canola	cytosol	41.78	39.37
CDY00004	Canola	nucleus	41.39	38.99
CDY19706	Canola	nucleus	41.19	38.88
CDY72546	Canola	nucleus	16.04	19.29
CDY04340	Canola	plasma membrane	17.23	18.32
CDY24519	Canola	nucleus	17.62	18.31
CDY54131	Canola	mitochondrion	17.43	17.81
CDY39628	Canola	nucleus	14.65	16.23
CDY36542	Canola	nucleus	13.07	15.75

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	MapMan:17.1.1.2.1.5.2	UniProt:A0A078J3X0	EnsemblPlants:CDY57300
ProteinID:CDY57300	ProteinID:CDY57300.1	ncoils:Coil	EnsemblPlantsGene:GSBRNA2T00020772001	InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687
InterPro:IPR029012	InterPro:NOP5_N	InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf	PFAM:PF01798
PFAM:PF08156	PFscan:PS51358	PANTHER:PTHR10894	PANTHER:PTHR10894:SF0	SMART:SM00931	SUPFAM:SSF89124
UniParc:UPI0004EE1C5F	SEG:seg	:	:	:	:

Description

BnaC03g73340DBnaC03g73340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J3X0]

Coordinates

chrLK033562:-:29156..31778

Molecular Weight (calculated)

57015.3 Da

IEP (calculated)

8.932

GRAVY (calculated)

-0.570

Length

505 amino acids

Sequence
(BLAST)

001: MSMYLLYESS SGYGLFEAHG LDEIGQNTEA VRSSVSDLSR FGRVVQLTAF HPSESALDAL NQINAVSEGY MSDELRSFLE LNLPKVKEGK KPKFSLGVSE
101: PKIGSCIFEA TKIPCQSNEF VHELLRGVRQ HFDRFIKDLK PGDLEKAQLG LAHSYSRAKV KFNVNRVDNM VIQAIFLLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYARVSKMI EDKSKLSEEH IPMLTEVLGD EDKAREVVEA GKASMGQDLS PLDLINVQTF AQRVMDLADY RKKLYDYLVA KMSDIAPNLA
301: ALIGDMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFM GRASAKNKGR IARYLANKCS IASRIDCFAD SSTTAFGEKL
401: REQVEERLEF YDKGVAPRKN VDVMKEVMEN LEKKDEGEVK AVEGSEKKKK KEKRKAEEKD EEVEEEEEKS KKKKKKSKVV EEEVTTDNGN SKKKKKKKTK
501: SQDVE

Best Arabidopsis Sequence Match ( AT3G12860.1 )
(BLAST)

001: MKIYLLSESP SGYGLFEGHG SDEIGQNTEA VRSSVSDLSR FGRVVQLTAF HPFQSALDAL NQINAVSEGY MSDELRSFLE LNLPKVKEGK KPKFSLGVSE
101: PKIGSCIFEA TKIPCQSNEF VHELLRGVRQ HFDRFIKDLK PGDLEKAQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYAKVSKII VDKSKLSEEH IPMLTEALGD EDKAREVIEA GKASMGQDLS PVDLINVQTF AQRVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARFLANKCS IASRIDCFSD NSTTAFGEKL
401: REQVEERLDF YDKGVAPRKN VDVMKEVLEN LEKKDEGEKT VDASEKKKKR KTEEKEEEKE EEKSKKKKKK SKAVEGEELT ATDNGHSKKK KKTKSQDDE

Arabidopsis Description

NOP56-like pre RNA processing ribonucleoprotein [Source:UniProtKB/TrEMBL;Acc:Q9LTV0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.