Factsheet for Zm00001d047472_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, secretory
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92268	Sorghum	nucleus	93.67	96.91
Zm00001d029174_P005	Maize	nucleus	91.92	95.26
Os03t0352300-01	Rice	nucleus	86.82	89.49
CDY08398	Canola	cytosol	3.34	79.17
GSMUA_AchrUn_...	Banana	nucleus	76.63	78.14
GSMUA_Achr5P08210_001	Banana	nucleus	74.87	76.62
VIT_17s0000g01720.t01	Wine grape	nucleus	74.17	75.63
AT3G12860.1	Thale cress	nucleus	65.03	74.15
CDX98286	Canola	cytosol	17.57	74.07
CDY59117	Canola	nucleus	66.96	73.98
KRH57211	Soybean	nucleus	71.35	73.82
CDY63487	Canola	nucleus	67.31	73.51
Bra040785.1-P	Field mustard	nucleus	67.31	73.51
KRH03927	Soybean	nucleus	70.83	73.41
CDY10510	Canola	nucleus	66.08	73.29
Bra001474.1-P	Field mustard	nucleus	65.03	73.27
CDX82572	Canola	nucleus	65.03	73.27
CDY57300	Canola	nucleus	64.85	73.07
CDY42406	Canola	nucleus	66.61	73.03
PGSC0003DMT400007150	Potato	nucleus	70.83	72.88
Bra030816.1-P	Field mustard	nucleus	66.26	72.64
KRH48644	Soybean	nucleus	70.3	72.46
Solyc01g100570.2.1	Tomato	nucleus	70.3	72.33
AT1G56110.1	Thale cress	nucleus	66.08	72.03
CDY04069	Canola	cytosol	49.91	63.68
Bra033094.1-P	Field mustard	cytosol	49.38	63.15
CDY44398	Canola	cytosol	49.38	63.15
Bra034724.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	23.02	58.22
CDY52879	Canola	nucleus	32.69	57.59
Zm00001d034259_P001	Maize	cytosol	14.06	54.42
CDY08399	Canola	endoplasmic reticulum, plasma membrane	15.47	49.72
Zm00001d007484_P001	Maize	cytosol	27.94	46.36
Zm00001d038818_P001	Maize	cytosol	21.97	43.25
Zm00001d011996_P002	Maize	cytosol	21.97	40.45
Zm00001d047481_P003	Maize	plastid	39.54	40.04
Zm00001d029144_P004	Maize	cytosol	38.84	39.18
Zm00001d031027_P001	Maize	plastid	29.88	28.76
Zm00001d036776_P001	Maize	mitochondrion	29.88	27.64
Zm00001d002716_P002	Maize	nucleus	15.82	18.56

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	EntrezGene:103639131	MapMan:17.1.1.2.1.5.2	ProteinID:AQL06641.1
ncoils:Coil	InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687	InterPro:IPR029012	UniProt:K7VIA0	InterPro:NOP5_N
InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf	PFAM:PF01798	PFAM:PF08156	PFscan:PS51358
PANTHER:PTHR10894	PANTHER:PTHR10894:SF0	SMART:SM00931	SUPFAM:SSF89124	UniParc:UPI000220B3A6	EnsemblPlantsGene:Zm00001d047472
EnsemblPlants:Zm00001d047472_P002	EnsemblPlants:Zm00001d047472_T002	SEG:seg	:	:	:

Description

homolog of nucleolar protein NOP56

Coordinates

chr9:+:131248332..131251561

Molecular Weight (calculated)

63160.3 Da

IEP (calculated)

9.049

GRAVY (calculated)

-0.569

Length

569 amino acids

Sequence
(BLAST)

001: MALYLLFESA SGYGLFHAYG IDEIGQSVEA VRSSVLDLDR FGKAVKLTAF NPFSSAVDAL NQCNAISEGI MTDELRSFLE LNLPKPKEGK KAKYSLGVVE
101: PKVGSHISEV TGIPCQSNEF VQELLRGVRL HFDRFINELK DSDLEKAQLG LGHSYSRAKV KFNVNRVDNM VIQAIFLLDT LDKDINSFSM RVREWFSWHF
201: PELVKIVNDN YLYAKLAKFI VNKSDLAEKD IPALADIVGD EDKAKEIVEA AKASMGQDLS PVDLINVQQF AQRVMNLSEY RKNLYEYLVT KMNDIAPNLT
301: SLIGEVVGAR LISHAGSLSN LAKCAASTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASTKNKGR MARYLANKCS IASRIDCYSE ASTSVFGQKL
401: REQVEERLEF YDKGVAPRKN LDVMKAAIDS MVNDTLMDDD GKADNEKADT SAKKSKKKKT KTETDGDAMD VDKPSNVADG EAELGTEKKK KKKKHKLEEA
501: QEENGAAHAN GDAEETQTPK KKKKKSREIS EEAEPKTATE GKKKKNEEAE PKTATEGKKK KKKAVKADE

Best Arabidopsis Sequence Match ( AT3G12860.1 )
(BLAST)

001: MKIYLLSESP SGYGLFEGHG SDEIGQNTEA VRSSVSDLSR FGRVVQLTAF HPFQSALDAL NQINAVSEGY MSDELRSFLE LNLPKVKEGK KPKFSLGVSE
101: PKIGSCIFEA TKIPCQSNEF VHELLRGVRQ HFDRFIKDLK PGDLEKAQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYAKVSKII VDKSKLSEEH IPMLTEALGD EDKAREVIEA GKASMGQDLS PVDLINVQTF AQRVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARFLANKCS IASRIDCFSD NSTTAFGEKL
401: REQVEERLDF YDKGVAPRKN VDVMKEVLEN LEKKDEGEKT VDASEKKKKR KTEEKEEEKE EEKSKKKKKK SKAVEGEELT ATDNGHSKKK KKTKSQDDE

Arabidopsis Description

NOP56-like pre RNA processing ribonucleoprotein [Source:UniProtKB/TrEMBL;Acc:Q9LTV0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.