Factsheet for VIT_17s0000g01720.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2
nucleus 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0661800-01	Rice	nucleus	46.06	82.11
Solyc01g100570.2.1	Tomato	nucleus	80.47	81.19
PGSC0003DMT400007150	Potato	nucleus	80.47	81.19
AT1G56110.1	Thale cress	nucleus	75.09	80.27
KRH57211	Soybean	nucleus	79.03	80.18
AT3G12860.1	Thale cress	nucleus	71.51	79.96
GSMUA_AchrUn_...	Banana	nucleus	79.57	79.57
KRH48644	Soybean	nucleus	78.49	79.35
GSMUA_Achr5P08210_001	Banana	nucleus	79.03	79.32
KRH03927	Soybean	nucleus	77.78	79.05
EER92268	Sorghum	nucleus	76.16	77.27
Zm00001d029174_P005	Maize	nucleus	75.63	76.87
TraesCS1B01G401000.1	Wheat	nucleus	74.73	75.96
TraesCS2B01G148000.1	Wheat	nucleus	73.48	75.93
TraesCS1A01G379300.1	Wheat	nucleus	74.55	75.91
TraesCS1D01G386500.1	Wheat	nucleus	74.55	75.91
TraesCS2D01G128600.1	Wheat	nucleus	73.3	75.88
Os03t0352300-01	Rice	nucleus	74.91	75.72
TraesCS2A01G125500.1	Wheat	nucleus	73.12	75.7
Zm00001d047472_P002	Maize	plastid	75.63	74.17
HORVU1Hr1G083960.6	Barley	nucleus	73.84	73.18
HORVU2Hr1G022140.3	Barley	nucleus	73.3	73.04
EER97682	Sorghum	endoplasmic reticulum	72.94	72.04
HORVU2Hr1G022110.2	Barley	plastid	68.64	70.02
TraesCS2B01G147900.1	Wheat	plastid	56.45	68.03
TraesCS2D01G128500.1	Wheat	plastid	56.45	67.74
TraesCS2A01G125400.1	Wheat	cytosol, plastid	56.27	67.67
HORVU2Hr1G022120.1	Barley	mitochondrion	58.24	63.6
Bra034724.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	24.19	60.0
CDY08399	Canola	endoplasmic reticulum, plasma membrane	16.31	51.41
VIT_14s0030g01270.t01	Wine grape	nucleus	37.99	37.0
VIT_01s0026g00230.t01	Wine grape	cytosol	16.13	17.68
VIT_16s0039g02100.t01	Wine grape	plastid	1.25	8.14

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	EntrezGene:100267928	wikigene:100267928	MapMan:17.1.1.2.1.5.2
ProteinID:CCB43316	ProteinID:CCB43316.1	ncoils:Coil	UniProt:F6GST1	EMBL:FN594950	GO:GO:0000154
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0030515	GO:GO:0031428	GO:GO:0032040	InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687
InterPro:IPR029012	EntrezGene:LOC100267928	wikigene:LOC100267928	InterPro:NOP5_N	InterPro:NOSIC	InterPro:Nop_dom
InterPro:Nop_dom_sf	PFAM:PF01798	PFAM:PF08156	PFscan:PS51358	PANTHER:PTHR10894	PANTHER:PTHR10894:SF0
SMART:SM00931	SUPFAM:SSF89124	TIGR:TC60436	UniParc:UPI00019850F0	ArrayExpress:VIT_17s0000g01720	EnsemblPlantsGene:VIT_17s0000g01720
EnsemblPlants:VIT_17s0000g01720.t01	unigene:Vvi.3462	RefSeq:XP_002283518	RefSeq:XP_002283518.1	SEG:seg	:

Description

No Description!

Coordinates

chr17:+:1274842..1279215

Molecular Weight (calculated)

62435.6 Da

IEP (calculated)

8.592

GRAVY (calculated)

-0.581

Length

558 amino acids

Sequence
(BLAST)

001: MALYLLYESA SGYALFLAHG LDEIGQNTEA VRSSVSDLNR FGKVVKLAAF HPFESALDAL NQCNSVSEGL MTDELRSFLE LNLPKVKEGK KPKFSLGTAE
101: PKIGSHIFED TKIPCQSNEF VLELLRGVRL HFDRFIKDLK PGDLEKAQLG LGHSYSRAKV KFNVNRVDNM VIQAIFLLDT LDKDINSFSM RVREWYSWHF
201: PELVKIVNDN YLYAKVAKFV ENKLELSEDK IPGLTEILGD EDKAKEIVEA AKASMGQDLS PIDLINVQQF AQRVMDLSEY RKKLYEYLVT KMNDIAPNLA
301: SLIGEVVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASARNKGR MARYLANKCS IASRIDCFAE SNTTVFGEKL
401: REQVEERLEF YDKGIAPRKN IDVMKAAIEI TQNNDTEDKA TTEPSAKKSK KKKSKVEAAE DGEPMVEDKP TAATNGDASE EPKTEKKKKK EKRKLVEEEE
501: EEQVQAVENS IGVNGVNTED GTAKKKKKKK SKDEDGERLA AVSEGKKKKK KSRSEDDD

Best Arabidopsis Sequence Match ( AT1G56110.1 )
(BLAST)

001: MAMYVIYESS SGYGLFEVHG LDEIGQNTEA VRTSVSDLSR FGRVVQLTAF HPFESALDAL NQVNAVSEGV MTDELRSFLE LNLPKVKEGK KPKFSLGLAE
101: PKLGSHIFEA TKIPCQSNEF VLELLRGVRQ HFDRFIKDLK PGDLEKSQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYARVSKMI DDKSKLTEDH IPMLTEVLGD EDKAKEVIEA GKASMGSDLS PLDLINVQTF AQKVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARYLANKCS IASRIDCFAD GATTAFGEKL
401: REQVEERLEF YDKGVAPRKN VDVMKEVIEN LKQEEEGKEP VDASVKKSKK KKAKGEEEEE VVAMEEDKSE KKKKKEKRKM ETAEENEKSE KKKTKKSKAG
501: GEEETDDGHS TKKKKKKSKS AE

Arabidopsis Description

NOP56At1g56110/T6H22_9 [Source:UniProtKB/TrEMBL;Acc:Q9SGT7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.