CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161
endoplasmic reticulum: 23041469
nucleus: 24385303
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 24385303 doi

S Komatsu, S Hiraga, MZ Nouri

National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba, 305-8518, Japan, skomatsu@affrc.go.jp.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57211	Soybean	nucleus	96.54	96.36
KRH48644	Soybean	nucleus	86.89	86.41
Os07t0661800-01	Rice	nucleus	44.81	78.59
VIT_17s0000g01720.t01	Wine grape	nucleus	79.05	77.78
PGSC0003DMT400007150	Potato	nucleus	78.32	77.76
Solyc01g100570.2.1	Tomato	nucleus	77.6	77.03
AT3G12860.1	Thale cress	nucleus	69.22	76.15
AT1G56110.1	Thale cress	nucleus	71.22	74.9
GSMUA_AchrUn_...	Banana	nucleus	75.05	73.84
EER92268	Sorghum	nucleus	73.59	73.45
Zm00001d029174_P005	Maize	nucleus	73.22	73.22
GSMUA_Achr5P08210_001	Banana	nucleus	73.95	73.02
TraesCS2B01G148000.1	Wheat	nucleus	71.04	72.22
TraesCS2D01G128600.1	Wheat	nucleus	70.86	72.17
TraesCS2A01G125500.1	Wheat	nucleus	70.67	71.99
Os03t0352300-01	Rice	nucleus	72.13	71.74
TraesCS1B01G401000.1	Wheat	nucleus	71.4	71.4
TraesCS1D01G386500.1	Wheat	nucleus	70.86	70.99
TraesCS1A01G379300.1	Wheat	nucleus	70.86	70.99
Zm00001d047472_P002	Maize	plastid	73.41	70.83
HORVU2Hr1G022140.3	Barley	nucleus	70.31	68.93
HORVU1Hr1G083960.6	Barley	nucleus	70.49	68.74
EER97682	Sorghum	endoplasmic reticulum	69.4	67.43
TraesCS2D01G128500.1	Wheat	plastid	55.74	65.81
HORVU2Hr1G022110.2	Barley	plastid	65.21	65.45
TraesCS2B01G147900.1	Wheat	plastid	55.01	65.23
TraesCS2A01G125400.1	Wheat	cytosol, plastid	55.01	65.09
HORVU2Hr1G022120.1	Barley	mitochondrion	56.83	61.06
Bra034724.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	23.68	57.78
CDY08399	Canola	endoplasmic reticulum, plasma membrane	15.3	47.46
KRH29399	Soybean	nucleus	36.98	36.84
KRH24415	Soybean	nucleus	37.16	36.69
KRH07033	Soybean	nucleus	16.03	18.11
KRG94405	Soybean	nucleus	16.03	18.11

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	EntrezGene:100815506	MapMan:17.1.1.2.1.5.2	EMBL:ACUP02010369
ncoils:Coil	EnsemblPlantsGene:GLYMA_17G128400	GO:GO:0000154	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030515	GO:GO:0031428
GO:GO:0032040	InterPro:Helix_hairpin_bin_sf	UniProt:I1MUN3	InterPro:IPR002687	InterPro:IPR029012	EnsemblPlants:KRH03927
ProteinID:KRH03927	ProteinID:KRH03927.1	InterPro:NOP5_N	InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf
PFAM:PF01798	PFAM:PF08156	PFscan:PS51358	PANTHER:PTHR10894	PANTHER:PTHR10894:SF0	SMART:SM00931
SUPFAM:SSF89124	UniParc:UPI000233E676	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:10267423..10270869

Molecular Weight (calculated)

61124.8 Da

IEP (calculated)

8.776

GRAVY (calculated)

-0.562

Length

549 amino acids

Sequence
(BLAST)

001: MALFLLYESA SGYTLFEVHG LDEIGQNTEA VRNSVSDLNR FGKVVKLRSF NPFTSALDAL KQCNAVSEGI LTDELRTVLE TNLPKVKEGK KSKFSLGVSD
101: PKIGSQISEV TKIPCQSNEF VSELLRGVRF HFDTFVGDLK SGDLEKAQLG LGHSYSRAKV KFNVNRVDNM VIQAIFLLDT LDKDVNSFSM RVREWYSWHF
201: PELVKIVNDN YLYAKVAKFI EDKAKLAEDK IPALTDIVGD EDKAKEIVEA AKASMGQDLS PVDLINVHQF AQRVMDLSEY RKNLYDYLVA KMNDIAPNLA
301: SLIGEVVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR MARYLANKCS IASRIDCFSE KGTTVFGQKL
401: REQVEERLDF YDKGVAPRKN IDVMQAAIES AENKDTEMET EAPAEVSGKK TKKKKQKAAD AEDDVAIDTN GDAVEDHKSE RKKKKKEKRK LEQEMEVDDQ
501: AEDDGANGVT SEQEGTAKKK NKKDSNGEAF EAGEVSKKKK KKSKKKDIE

Best Arabidopsis Sequence Match ( AT1G56110.1 )
(BLAST)

001: MAMYVIYESS SGYGLFEVHG LDEIGQNTEA VRTSVSDLSR FGRVVQLTAF HPFESALDAL NQVNAVSEGV MTDELRSFLE LNLPKVKEGK KPKFSLGLAE
101: PKLGSHIFEA TKIPCQSNEF VLELLRGVRQ HFDRFIKDLK PGDLEKSQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYARVSKMI DDKSKLTEDH IPMLTEVLGD EDKAKEVIEA GKASMGSDLS PLDLINVQTF AQKVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARYLANKCS IASRIDCFAD GATTAFGEKL
401: REQVEERLEF YDKGVAPRKN VDVMKEVIEN LKQEEEGKEP VDASVKKSKK KKAKGEEEEE VVAMEEDKSE KKKKKEKRKM ETAEENEKSE KKKTKKSKAG
501: GEEETDDGHS TKKKKKKSKS AE

Arabidopsis Description

NOP56At1g56110/T6H22_9 [Source:UniProtKB/TrEMBL;Acc:Q9SGT7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.