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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • plastid 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus, plastid, secretory
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:nucleus
Plant-mPloc:nucleus
Predotar:plastid
PProwler:secretory
WoLF PSORT:plastid
YLoc:cytosol
 nucleus: 21132161
endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
nucleus: 27291164
mitochondrion: 27780359
endoplasmic reticulum: 28499913
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 27780359 doi
G Mustafa, S Komatsu
Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 23041469 doi
S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa
National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH57211 Soybean nucleus 87.5 87.82
KRH03927 Soybean nucleus 86.41 86.89
VIT_17s0000g01720.t01 Wine grape nucleus 79.35 78.49
Os07t0661800-01 Rice nucleus 43.84 77.32
PGSC0003DMT400007150 Potato nucleus 77.36 77.22
Solyc01g100570.2.1 Tomato nucleus 77.17 77.03
AT3G12860.1 Thale cress nucleus 68.66 75.95
GSMUA_AchrUn_... Banana nucleus 75.54 74.73
AT1G56110.1 Thale cress nucleus 70.29 74.33
GSMUA_Achr5P08210_001 Banana nucleus 74.64 74.1
EER92268 Sorghum nucleus 72.46 72.73
Zm00001d029174_P005 Maize nucleus 72.1 72.5
TraesCS1B01G401000.1 Wheat nucleus 71.38 71.77
TraesCS2B01G148000.1 Wheat nucleus 70.11 71.67
Os03t0352300-01 Rice nucleus 71.56 71.56
TraesCS2D01G128600.1 Wheat nucleus 69.75 71.43
TraesCS1D01G386500.1 Wheat nucleus 70.83 71.35
TraesCS1A01G379300.1 Wheat nucleus 70.83 71.35
TraesCS2A01G125500.1 Wheat nucleus 69.2 70.87
Zm00001d047472_P002 Maize plastid 72.46 70.3
HORVU1Hr1G083960.6 Barley nucleus 70.65 69.27
EER97682 Sorghum endoplasmic reticulum 70.11 68.5
HORVU2Hr1G022140.3 Barley nucleus 69.38 68.39
HORVU2Hr1G022110.2 Barley plastid 65.4 66.0
TraesCS2D01G128500.1 Wheat plastid 54.89 65.16
TraesCS2B01G147900.1 Wheat plastid 54.53 65.01
TraesCS2A01G125400.1 Wheat cytosol, plastid 54.17 64.44
HORVU2Hr1G022120.1 Barley mitochondrion 56.16 60.67
Bra034724.1-P Field mustard endoplasmic reticulum, golgi, vacuole 24.09 59.11
CDY08399 Canola endoplasmic reticulum, plasma membrane 15.76 49.15
KRH29399 Soybean nucleus 37.68 37.75
KRH24415 Soybean nucleus 37.86 37.59
KRH07033 Soybean nucleus 15.76 17.9
KRG94405 Soybean nucleus 15.76 17.9
Protein Annotations
Gene3D:1.10.150.460Gene3D:1.10.246.90Gene3D:1.10.287.660EntrezGene:100779446MapMan:17.1.1.2.1.5.2EMBL:ACUP02004258
ncoils:CoilEnsemblPlantsGene:GLYMA_07G102600GO:GO:0000154GO:GO:0003674GO:GO:0003676GO:GO:0003723
GO:GO:0005215GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0005730GO:GO:0006139GO:GO:0006810GO:GO:0008150GO:GO:0008152GO:GO:0008271
GO:GO:0008272GO:GO:0009987GO:GO:0015116GO:GO:0016020GO:GO:0016021GO:GO:0030515
GO:GO:0031428GO:GO:0032040GO:GO:0055085GO:GO:1902358InterPro:Helix_hairpin_bin_sfUniProt:I1KJ56
InterPro:IPR002687InterPro:IPR029012EnsemblPlants:KRH48644ProteinID:KRH48644ProteinID:KRH48644.1InterPro:NOP5_N
InterPro:NOSICInterPro:Nop_domInterPro:Nop_dom_sfPFAM:PF01798PFAM:PF08156PFscan:PS51358
PANTHER:PTHR10894PANTHER:PTHR10894:SF0SMART:SM00931SUPFAM:SSF89124UniParc:UPI00023C740FSEG:seg
Description
hypothetical protein
Coordinates
chr7:+:9809890..9814296
Molecular Weight (calculated)
61467.6 Da
IEP (calculated)
9.480
GRAVY (calculated)
-0.509
Length
552 amino acids
Sequence
(BLAST)
001: MALFLLYESA SGYALLEAHG LDEIGHTTEA VRNSVSDLNR FGKVVKLRSF NPFTSALDAL KQCNAVSEGL LTDELRTVLE TNLPKVKEGK KSKFSLGVSD
101: PKIGSQISEL TKIPCQSNEF VAELLRGVRL HFDRFVSDLK SGDLEKAQLG LGHSYSRAKV KFNVNRVDNM VIQAIFLLDT LDKDINSFSM RVREWYSWHF
201: PELVKIINDN YLYAKVAKFI EDKSKLSEDK ISSLTDIVGD EDKAKEIVEA AKASMGQDLS PVDLVNVQQF AQRVMDLSEY RRKLYDYLVA KMNDIAPNLA
301: SLIGEVVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARYLANKCS IASRIDCFSE RGTTTFGEKL
401: REQVEERLDF YDKGVAPRKN IDVMKSAIES VETEYTAMET EAPVEVSGKK AKKKKHKASV TDDGDNMAVD KITETTNGDA LEDHKSEKKK KKKEKRKLDL
501: EVELNDQAMD GGANGVESEQ DGAVKKKKKK DKRGDNGEVL EAAIETKKKK KK
Best Arabidopsis Sequence Match ( AT1G56110.1 )
(BLAST)
001: MAMYVIYESS SGYGLFEVHG LDEIGQNTEA VRTSVSDLSR FGRVVQLTAF HPFESALDAL NQVNAVSEGV MTDELRSFLE LNLPKVKEGK KPKFSLGLAE
101: PKLGSHIFEA TKIPCQSNEF VLELLRGVRQ HFDRFIKDLK PGDLEKSQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYARVSKMI DDKSKLTEDH IPMLTEVLGD EDKAKEVIEA GKASMGSDLS PLDLINVQTF AQKVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARYLANKCS IASRIDCFAD GATTAFGEKL
401: REQVEERLEF YDKGVAPRKN VDVMKEVIEN LKQEEEGKEP VDASVKKSKK KKAKGEEEEE VVAMEEDKSE KKKKKEKRKM ETAEENEKSE KKKTKKSKAG
501: GEEETDDGHS TKKKKKKSKS AE
Arabidopsis Description
NOP56At1g56110/T6H22_9 [Source:UniProtKB/TrEMBL;Acc:Q9SGT7]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.