Factsheet for HORVU1Hr1G083960.6

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 1
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
MultiLoc:	nucleus
Predotar:	plastid
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G379300.1	Wheat	nucleus	93.96	96.53
TraesCS1D01G386500.1	Wheat	nucleus	93.78	96.35
TraesCS1B01G401000.1	Wheat	nucleus	93.43	95.81
HORVU2Hr1G022140.3	Barley	nucleus	90.23	90.71
Os07t0661800-01	Rice	nucleus	49.38	88.82
HORVU2Hr1G022110.2	Barley	plastid	84.72	87.2
EER97682	Sorghum	endoplasmic reticulum	82.59	82.3
HORVU2Hr1G022120.1	Barley	mitochondrion	69.27	76.32
GSMUA_AchrUn_...	Banana	nucleus	74.96	75.63
CDY08398	Canola	cytosol	3.2	75.0
CDX98286	Canola	cytosol	17.94	74.81
GSMUA_Achr5P08210_001	Banana	nucleus	73.36	74.28
VIT_17s0000g01720.t01	Wine grape	nucleus	73.18	73.84
CDY59117	Canola	nucleus	66.07	72.23
CDY10510	Canola	nucleus	65.54	71.93
CDY42406	Canola	nucleus	66.07	71.68
CDY63487	Canola	nucleus	66.25	71.59
Bra040785.1-P	Field mustard	nucleus	66.25	71.59
AT3G12860.1	Thale cress	nucleus	63.41	71.54
Bra030816.1-P	Field mustard	nucleus	65.72	71.29
PGSC0003DMT400007150	Potato	nucleus	69.63	70.89
KRH57211	Soybean	nucleus	69.09	70.73
KRH48644	Soybean	nucleus	69.27	70.65
Bra001474.1-P	Field mustard	nucleus	63.23	70.5
CDX82572	Canola	nucleus	63.23	70.5
CDY57300	Canola	nucleus	63.23	70.5
KRH03927	Soybean	nucleus	68.74	70.49
Solyc01g100570.2.1	Tomato	nucleus	69.09	70.34
AT1G56110.1	Thale cress	nucleus	65.01	70.11
CDY04069	Canola	cytosol	48.67	61.44
Bra033094.1-P	Field mustard	cytosol	48.13	60.9
CDY44398	Canola	cytosol	48.13	60.9
CDY52879	Canola	nucleus	30.91	53.87
Bra034724.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	21.31	53.33
CDY08399	Canola	endoplasmic reticulum, plasma membrane	14.03	44.63
HORVU4Hr1G041810.4	Barley	cytosol	36.41	37.75
HORVU2Hr1G020690.6	Barley	cytosol	34.64	36.11

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	MapMan:17.1.1.2.1.5.2	UniProt:A0A287GJ75	EnsemblPlantsGene:HORVU1Hr1G083960
EnsemblPlants:HORVU1Hr1G083960.6	InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687	InterPro:IPR029012	InterPro:NOP5_N	InterPro:NOSIC
InterPro:Nop_dom	InterPro:Nop_dom_sf	PFAM:PF01798	PFAM:PF08156	PFscan:PS51358	PANTHER:PTHR10894
PANTHER:PTHR10894:SF0	SMART:SM00931	SUPFAM:SSF89124	UniParc:UPI000B486562	SEG:seg	:

Description

No Description!

Coordinates

chrchr1H:+:532950768..532954310

Molecular Weight (calculated)

62909.5 Da

IEP (calculated)

9.451

GRAVY (calculated)

-0.506

Length

563 amino acids

Sequence
(BLAST)

001: MALYLLFESA SGYALFHAYG IDEIGQSVDA VRSTVLDLNR FSKAVKLAGF TPFLSAVDAL NQCNAISEGI MTDELRNFLE LNLPKVKEGK KAKFRVGVTE
101: PKVGSHITEA TGIPCESNDY IQELLRAVRL HFDQFIEQLK PSDLEKAQLG LGHSYSRAKV KFNVNRVDNM VIQAIFLLDT LDKDVNSFSM RVREWYGWHF
201: PELVKIVNDN YLYAKLAKFV VNKSDLSEKD IPALADLIGD EDKAKEIVEA AKASMGQDLS PVDLINVQQF AQRVMNLSEY RKNLYEYLVT KMNDIAPNLT
301: SLIGEMVGAR LISHAGSLSN LAKCPASTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASTKNKGR MARYLANKCS IASRIDCYSD MSSSIFGEKL
401: REQVEERLDF YDKGVAPRKN LDVMKAAIDG MTSTVSEEDK EKDNGVHVSA KKSKKKKSKS EADGDAMDLD KPASTAAGEE TEKKKKKKKH KLEEPQDQEM
501: AANVDGEQDE TPKKKKKKNR DASESVEPKT ATEGKKKKKK SKGEHPMVVL NTFLRSIMWK SMD

Best Arabidopsis Sequence Match ( AT3G12860.1 )
(BLAST)

001: MKIYLLSESP SGYGLFEGHG SDEIGQNTEA VRSSVSDLSR FGRVVQLTAF HPFQSALDAL NQINAVSEGY MSDELRSFLE LNLPKVKEGK KPKFSLGVSE
101: PKIGSCIFEA TKIPCQSNEF VHELLRGVRQ HFDRFIKDLK PGDLEKAQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYAKVSKII VDKSKLSEEH IPMLTEALGD EDKAREVIEA GKASMGQDLS PVDLINVQTF AQRVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARFLANKCS IASRIDCFSD NSTTAFGEKL
401: REQVEERLDF YDKGVAPRKN VDVMKEVLEN LEKKDEGEKT VDASEKKKKR KTEEKEEEKE EEKSKKKKKK SKAVEGEELT ATDNGHSKKK KKTKSQDDE

Arabidopsis Description

NOP56-like pre RNA processing ribonucleoprotein [Source:UniProtKB/TrEMBL;Acc:Q9LTV0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.