Factsheet for Bra001474.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82572	Canola	nucleus	99.6	99.6
AT3G12860.1	Thale cress	nucleus	91.29	92.38
Bra040785.1-P	Field mustard	nucleus	88.51	85.8
Bra030816.1-P	Field mustard	nucleus	86.93	84.59
Os07t0661800-01	Rice	nucleus	45.54	73.48
Bra033094.1-P	Field mustard	cytosol	64.36	73.03
GSMUA_Achr5P08210_001	Banana	nucleus	76.04	69.06
GSMUA_AchrUn_...	Banana	nucleus	75.05	67.92
EER92268	Sorghum	nucleus	73.66	67.64
Zm00001d029174_P005	Maize	nucleus	73.47	67.58
TraesCS2A01G125500.1	Wheat	nucleus	72.08	67.53
TraesCS2B01G148000.1	Wheat	nucleus	72.08	67.41
TraesCS2D01G128600.1	Wheat	nucleus	71.68	67.16
Bra034724.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	29.31	65.78
TraesCS1D01G386500.1	Wheat	nucleus	71.09	65.51
TraesCS1A01G379300.1	Wheat	nucleus	71.09	65.51
Os03t0352300-01	Rice	nucleus	71.49	65.4
TraesCS1B01G401000.1	Wheat	nucleus	71.09	65.39
Zm00001d047472_P002	Maize	plastid	73.27	65.03
HORVU2Hr1G022140.3	Barley	nucleus	71.09	64.11
HORVU1Hr1G083960.6	Barley	nucleus	70.5	63.23
EER97682	Sorghum	endoplasmic reticulum	69.5	62.12
TraesCS2B01G147900.1	Wheat	plastid	56.04	61.12
HORVU2Hr1G022110.2	Barley	plastid	65.94	60.88
TraesCS2D01G128500.1	Wheat	plastid	56.04	60.86
TraesCS2A01G125400.1	Wheat	cytosol, plastid	55.05	59.91
HORVU2Hr1G022120.1	Barley	mitochondrion	58.81	58.12
Bra020601.1-P	Field mustard	nucleus	38.22	39.55
Bra009978.1-P	Field mustard	nucleus	41.78	39.29
Bra036111.1-P	Field mustard	nucleus	41.19	38.81
Bra031522.1-P	Field mustard	nucleus	18.22	18.93
Bra026149.1-P	Field mustard	nucleus	16.63	17.36

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	MapMan:17.1.1.2.1.5.2	EnsemblPlantsGene:Bra001474	EnsemblPlants:Bra001474.1
EnsemblPlants:Bra001474.1-P	ncoils:Coil	InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687	InterPro:IPR029012	UniProt:M4CB94
InterPro:NOP5_N	InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf	PFAM:PF01798	PFAM:PF08156
PFscan:PS51358	PANTHER:PTHR10894	PANTHER:PTHR10894:SF0	SMART:SM00931	SUPFAM:SSF89124	UniParc:UPI000254080D
SEG:seg	:	:	:	:	:

Description

AT3G12860 (E=1e-235) | nucleolar protein Nop56, putative

Coordinates

chrA03:+:16529691..16532174

Molecular Weight (calculated)

56896.2 Da

IEP (calculated)

9.087

GRAVY (calculated)

-0.568

Length

505 amino acids

Sequence
(BLAST)

001: MSMYLLYESS SGYGLFEAHG LDEIGQNTEA VRSSVSDLSR FGRVVQLTAF HPSKSALDAL NQINAVSEGY MSDELRSFLE LNLPKVKEGK KPKFSLGVSE
101: PKIGSCIFEA TKIPCQSNEF VHELLRGVRQ HFDRFIKDLK PGDLEKAQLG LAHSYSRAKV KFNVNRVDNM VIQAIFLLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYARVSKMI EDKSKLSEEH IPMLTEVLGD EDKAREVVEA GKASMGQDLS PLDLINVQTF AQRVMGLADY RKNLHDYLVA KMSDIAPNLA
301: ALIGDMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRAAAKNKGR IARYLANKCS IASRIDCFAD SSTTAFGEKL
401: REQVEERLEF YDKGVAPRKN VDVMKEVMEN LEKKDEGEAK AVEGSEKKKK KEKRKAEEKD EEVEEEEEKS KKKKKKSKVV EEEVTTDNGN SKKKKKKKTK
501: LQDDE

Best Arabidopsis Sequence Match ( AT3G12860.1 )
(BLAST)

001: MKIYLLSESP SGYGLFEGHG SDEIGQNTEA VRSSVSDLSR FGRVVQLTAF HPFQSALDAL NQINAVSEGY MSDELRSFLE LNLPKVKEGK KPKFSLGVSE
101: PKIGSCIFEA TKIPCQSNEF VHELLRGVRQ HFDRFIKDLK PGDLEKAQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYAKVSKII VDKSKLSEEH IPMLTEALGD EDKAREVIEA GKASMGQDLS PVDLINVQTF AQRVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARFLANKCS IASRIDCFSD NSTTAFGEKL
401: REQVEERLDF YDKGVAPRKN VDVMKEVLEN LEKKDEGEKT VDASEKKKKR KTEEKEEEKE EEKSKKKKKK SKAVEGEELT ATDNGHSKKK KKTKSQDDE

Arabidopsis Description

NOP56-like pre RNA processing ribonucleoprotein [Source:UniProtKB/TrEMBL;Acc:Q9LTV0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.