Factsheet for Bra020601.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52494	Canola	nucleus	98.57	90.58
Bra036111.1-P	Field mustard	nucleus	89.34	81.34
Bra009978.1-P	Field mustard	nucleus	89.34	81.19
AT5G27120.1	Thale cress	cytosol	87.7	80.3
Zm00001d038818_P001	Maize	cytosol	39.75	67.13
Solyc05g055880.2.1	Tomato	nucleus	69.67	66.28
PGSC0003DMT400015638	Potato	cytosol	72.75	64.78
Zm00001d007484_P001	Maize	cytosol	45.29	64.43
KRH29399	Soybean	nucleus	72.75	64.43
PGSC0003DMT400060016	Potato	cytosol	71.31	64.33
KRH24415	Soybean	nucleus	73.16	64.21
Solyc09g083080.2.1	Tomato	nucleus	72.13	63.77
VIT_14s0030g01270.t01	Wine grape	nucleus	74.8	63.7
TraesCS2A01G119400.1	Wheat	nucleus	71.31	62.14
HORVU4Hr1G041810.4	Barley	cytosol	68.85	61.88
TraesCS2D01G120400.1	Wheat	nucleus	70.9	61.79
TraesCS1B01G379200.1	Wheat	cytosol	70.7	61.61
HORVU2Hr1G020690.6	Barley	cytosol	67.62	61.11
Zm00001d047481_P003	Maize	plastid	69.67	60.5
Os03t0350300-01	Rice	nucleus	70.29	60.39
AT5G27140.2	Thale cress	cytosol	55.53	60.22
Os03t0350100-02	Rice	nucleus	70.08	60.21
Zm00001d029144_P004	Maize	cytosol	69.26	59.93
KXG39385	Sorghum	cytosol	69.47	59.58
Zm00001d011996_P002	Maize	cytosol	37.5	59.22
KXG34017	Sorghum	cytosol	68.85	59.15
GSMUA_Achr11P...	Banana	cytosol	70.49	58.8
GSMUA_Achr8P09940_001	Banana	cytosol	70.7	58.67
Zm00001d034259_P001	Maize	cytosol	17.62	58.5
TraesCS4A01G141500.1	Wheat	nucleus	69.26	58.48
TraesCS2B01G139100.1	Wheat	endoplasmic reticulum, plastid	70.7	56.84
Zm00001d031027_P001	Maize	plastid	50.61	41.79
Zm00001d036776_P001	Maize	mitochondrion	49.59	39.35
Bra040785.1-P	Field mustard	nucleus	42.01	39.35
Bra030816.1-P	Field mustard	nucleus	40.78	38.34
Bra001474.1-P	Field mustard	nucleus	39.55	38.22
Bra033094.1-P	Field mustard	cytosol	32.79	35.96
Bra034724.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	11.68	25.33
Bra031522.1-P	Field mustard	nucleus	18.65	18.72
Bra026149.1-P	Field mustard	nucleus	17.01	17.15

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	MapMan:35.1	EnsemblPlantsGene:Bra020601	EnsemblPlants:Bra020601.1
EnsemblPlants:Bra020601.1-P	ncoils:Coil	InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687	InterPro:IPR029012	UniProt:M4DVQ7
InterPro:NOP5_N	InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf	PFAM:PF01798	PFAM:PF08156
PFscan:PS51358	PANTHER:PTHR10894	PANTHER:PTHR10894:SF1	SMART:SM00931	SUPFAM:SSF89124	UniParc:UPI00025468DC
SEG:seg	:	:	:	:	:

Description

AT5G27120 (E=3e-109) | SAR DNA-binding protein, putative

Coordinates

chrA02:+:24280848..24283288

Molecular Weight (calculated)

53455.7 Da

IEP (calculated)

9.852

GRAVY (calculated)

-0.529

Length

488 amino acids

Sequence
(BLAST)

001: MLLLFETPGG FAIFKVLDEG KLSNVEDLGN VFSSAESARK MVKLKAFDKF DNTSEALEAV AKLVEGTPSK GLRKFLKANC KDETLAVADS KLGNIIKEKL
101: TIDCVHNNAV MELLRGVRSQ LSELITGLGE QDLAPMSLGL SHSLARYKLK FSSDKVDTMI IQAIGLLDDL DKELNTYAMR ILADEVEAEL KEASVISMGT
201: EVSDLDLIHI RELCDQVLSL AEYRAQLYDY LKSRMNTIAP NLTALVGELV GARLISHSGS LLNLSKQPGS TVQILGAEKA LFRALKTKHN TPKYGLIFHA
301: SVVGQAGGKN KPRIARSLAA KAALSIRCDA LGDAGDNSMG VENRLKLEAR LRSLEGKDLG RLAGSAKGKP KIEVYNKDKK MGSGGLIAPA KTYNTAADSL
401: LVSAENGVKE KKDKKKKKKA EAEEEEEAKS EESSKKKKKK KAKTEVEPEA EEASKKEKKK KRKHEEEETE EPAKKKEKKE KKKKKSEA

Best Arabidopsis Sequence Match ( AT5G27120.1 )
(BLAST)

001: MLILFETPGG FAIFKVLNEG KLSNVEDLGN EFSTAKLARK MVKLVAFDKF DNTAEALEAV AKLLEGTPSK GLRKFLKANC VGETLAVADS KLGNIIKEKL
101: KIVCVHNNAV MELLRGIRSQ LTELISGLGD QDLGPMSLGL SHSLARYKLK FSSDKVDTMI IQAIGLLDDL DKELNTYAMR VREWFGWHFP ELAKIVQDNI
201: LYAKAVKLMG NRINAAKLDF SEILADEIEA ELKEAAVISM GTEVSDLDLL HIRELCDQVL SLAEYRAQLY DYLKSRMNTI APNLTALVGE LVGARLISHG
301: GSLLNLAKQP GSTVQILGAE KALFRALKTK HATPKYGLIF HASVVGQAAP KNKGKISRSL AAKSVLAIRC DALGDSQDNT MGVENRLKLE ARLRTLEGKD
401: LGRLSGSAKG KPKIEVYDKD KKKGSGGLIT PAKTYNTAAD SLLQTPTVDS ENGVKEKKDK KKKKKADDEE EAKTEEPSKK KSNKKKTEAE PETAEEPAKK
501: EKKKKRKHEE EETEMPAKKK EKSEKKKKKK TEV

Arabidopsis Description

NOP5-1Probable nucleolar protein 5-1 [Source:UniProtKB/Swiss-Prot;Acc:O04658]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.