Factsheet for VIT_14s0030g01270.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034259_P001	Maize	cytosol	21.99	85.71
Zm00001d038818_P001	Maize	cytosol	43.11	85.47
Solyc05g055880.2.1	Tomato	nucleus	75.92	84.8
PGSC0003DMT400015638	Potato	cytosol	80.63	84.31
Solyc09g083080.2.1	Tomato	nucleus	80.45	83.51
PGSC0003DMT400060016	Potato	cytosol	77.49	82.07
Zm00001d007484_P001	Maize	cytosol	48.52	81.05
KRH29399	Soybean	nucleus	76.96	80.04
KRH24415	Soybean	nucleus	77.14	79.5
CDX80674	Canola	cytosol	73.12	78.17
CDY19706	Canola	nucleus	72.77	77.94
CDY00004	Canola	nucleus	72.6	77.61
Bra036111.1-P	Field mustard	nucleus	72.43	77.43
CDX86179	Canola	nucleus	72.25	77.09
Bra009978.1-P	Field mustard	nucleus	72.25	77.09
GSMUA_Achr11P...	Banana	cytosol	78.71	77.09
TraesCS2A01G119400.1	Wheat	nucleus	75.04	76.79
TraesCS2D01G120400.1	Wheat	nucleus	74.87	76.61
AT3G05060.1	Thale cress	cytosol	71.2	76.55
Zm00001d011996_P002	Maize	cytosol	41.19	76.38
GSMUA_Achr8P09940_001	Banana	cytosol	78.36	76.36
AT5G27120.1	Thale cress	cytosol	71.03	76.36
TraesCS1B01G379200.1	Wheat	cytosol	74.52	76.25
CDY52494	Canola	nucleus	70.51	76.08
HORVU2Hr1G020690.6	Barley	cytosol	71.2	75.56
Zm00001d029144_P004	Maize	cytosol	74.35	75.53
KXG39385	Sorghum	cytosol	74.69	75.22
Os03t0350100-02	Rice	nucleus	74.52	75.18
HORVU4Hr1G041810.4	Barley	cytosol	71.2	75.14
Zm00001d047481_P003	Maize	plastid	73.47	74.91
Os03t0350300-01	Rice	nucleus	74.17	74.82
Bra020601.1-P	Field mustard	nucleus	63.7	74.8
KXG34017	Sorghum	cytosol	73.65	74.3
CDY50583	Canola	cytosol, mitochondrion, nucleus, plastid	67.19	73.33
TraesCS4A01G141500.1	Wheat	nucleus	72.08	71.45
TraesCS2B01G139100.1	Wheat	endoplasmic reticulum, plastid	74.69	70.51
AT5G27140.2	Thale cress	cytosol	52.53	66.89
Zm00001d031027_P001	Maize	plastid	55.15	53.47
Zm00001d036776_P001	Maize	mitochondrion	54.45	50.73
VIT_17s0000g01720.t01	Wine grape	nucleus	37.0	37.99
VIT_01s0026g00230.t01	Wine grape	cytosol	16.93	19.06
VIT_16s0039g02100.t01	Wine grape	plastid	1.57	10.47

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	EntrezGene:100248675	wikigene:100248675	MapMan:17.1.1.2.1.5.3
EMBL:AM433343	ProteinID:CAN73717	ProteinID:CAN73717.1	ProteinID:CCB58126	ProteinID:CCB58126.1	ncoils:Coil
UniProt:F6HTW5	EMBL:FN596249	GO:GO:0000154	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030515	GO:GO:0031428
GO:GO:0032040	InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687	InterPro:IPR029012	EntrezGene:LOC100248675	wikigene:LOC100248675
InterPro:NOP5_N	InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf	PFAM:PF01798	PFAM:PF08156
PFscan:PS51358	PANTHER:PTHR10894	PANTHER:PTHR10894:SF1	SMART:SM00931	SUPFAM:SSF89124	TIGR:TC52219
UniParc:UPI00015CB5C5	ArrayExpress:VIT_14s0030g01270	EnsemblPlantsGene:VIT_14s0030g01270	EnsemblPlants:VIT_14s0030g01270.t01	unigene:Vvi.2939	RefSeq:XP_002273273
RefSeq:XP_002273273.2	RefSeq:XP_010659961.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr14:-:5790013..5795767

Molecular Weight (calculated)

63622.8 Da

IEP (calculated)

9.582

GRAVY (calculated)

-0.587

Length

573 amino acids

Sequence
(BLAST)

001: MLVLFETPAG FALFKVLDEG KLSKVEDLWK EFSSSESARQ VVKLKAFSKF ENTTEALSAA TLLIDSKPSK GLRKFLRVHC DGETLAVADS KLGNAIKEKL
101: QIECVHNNAV MELMRGVRSQ LTELISGLAV QDLAPMSLGL SHSLSRYKLK FSPDKVDTMI IQAIGLLDDL DKELNTYAMR VREWYGWHFP ELAKIVQDNI
201: LYAKAVKLMG NRTNAAKLDF SEILPEEVET ELKEAAMISM GTEVSDLDLM NIKELCDQVL SLSEYRAQLY DYLKSRMNTI APNLTALVGE LVGARLIAHG
301: GSLLNLAKQP GSTVQILGAE KALFRALKTK HATPKYGLIY HASLIGQAAP KLKGKISRSL AAKTALAIRY DALGDGQDNS MGLENRAKLE ARLRNLEGRE
401: LGHSAGSAKG KPKIEVYDKD RKKGSGALIT AAKTYNPAAD SVLGRIEDSA AREEEEMIPK KRKKEVEPSQ PEDTLVVVEE KKEKKEKKKK KKADVEDASL
501: PNDVVGDAEP ESEEVVKKEK KKKKKHSAEN DELQNEGEAG EKKKKKRKHA EPEEETKEPS KKKEKKKKKK SED

Best Arabidopsis Sequence Match ( AT5G27120.1 )
(BLAST)

001: MLILFETPGG FAIFKVLNEG KLSNVEDLGN EFSTAKLARK MVKLVAFDKF DNTAEALEAV AKLLEGTPSK GLRKFLKANC VGETLAVADS KLGNIIKEKL
101: KIVCVHNNAV MELLRGIRSQ LTELISGLGD QDLGPMSLGL SHSLARYKLK FSSDKVDTMI IQAIGLLDDL DKELNTYAMR VREWFGWHFP ELAKIVQDNI
201: LYAKAVKLMG NRINAAKLDF SEILADEIEA ELKEAAVISM GTEVSDLDLL HIRELCDQVL SLAEYRAQLY DYLKSRMNTI APNLTALVGE LVGARLISHG
301: GSLLNLAKQP GSTVQILGAE KALFRALKTK HATPKYGLIF HASVVGQAAP KNKGKISRSL AAKSVLAIRC DALGDSQDNT MGVENRLKLE ARLRTLEGKD
401: LGRLSGSAKG KPKIEVYDKD KKKGSGGLIT PAKTYNTAAD SLLQTPTVDS ENGVKEKKDK KKKKKADDEE EAKTEEPSKK KSNKKKTEAE PETAEEPAKK
501: EKKKKRKHEE EETEMPAKKK EKSEKKKKKK TEV

Arabidopsis Description

NOP5-1Probable nucleolar protein 5-1 [Source:UniProtKB/Swiss-Prot;Acc:O04658]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.