Factsheet for VIT_01s0026g00230.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g078430.2.1	Tomato	nucleus	83.1	87.58
PGSC0003DMT400012169	Potato	nucleus	83.1	87.58
VIT_16s0039g02100.t01	Wine grape	plastid	14.54	86.05
KRH07033	Soybean	nucleus	82.12	86.01
KRG94405	Soybean	nucleus	82.12	86.01
GSMUA_Achr3P06150_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	83.1	85.98
OQU82106	Sorghum	nucleus	79.57	83.68
Zm00001d002716_P002	Maize	nucleus	79.37	83.3
Os07t0141600-01	Rice	nucleus	78.78	82.85
Os04t0555400-01	Rice	nucleus	78.59	82.64
TraesCS1D01G383400.2	Wheat	nucleus	77.41	81.24
TraesCS1A01G376100.1	Wheat	nucleus	77.41	81.24
TraesCS2B01G046400.1	Wheat	nucleus	75.83	81.09
CDY72546	Canola	nucleus	64.44	78.1
Bra031522.1-P	Field mustard	nucleus	72.89	76.34
TraesCS1B01G396600.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	77.21	76.16
AT1G60170.1	Thale cress	nucleus	72.1	75.67
TraesCS2B01G267700.1	Wheat	cytosol	69.16	75.21
CDY04340	Canola	plasma membrane	69.74	74.74
CDY24519	Canola	nucleus	69.55	72.84
CDY54131	Canola	mitochondrion	69.55	71.66
GSMUA_Achr9P14550_001	Banana	plasma membrane	61.49	71.62
KXG30826	Sorghum	nucleus	58.55	68.19
PGSC0003DMT400049589	Potato	cytosol, nucleus, plastid	59.92	66.3
PGSC0003DMT400000083	Potato	cytosol, nucleus, plasma membrane	58.94	65.79
Solyc07g064070.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	57.76	64.9
CDY39628	Canola	nucleus	57.96	64.69
CDY36542	Canola	nucleus	52.85	64.2
Bra026149.1-P	Field mustard	nucleus	60.71	63.84
Os02t0730100-00	Rice	extracellular	17.29	59.86
AT1G70400.3	Thale cress	cytosol	27.7	51.46
VIT_14s0030g01270.t01	Wine grape	nucleus	19.06	16.93
VIT_17s0000g01720.t01	Wine grape	nucleus	17.68	16.13

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	MapMan:16.4.1.3.3	ProteinID:CCB56659	ProteinID:CCB56659.1
UniProt:F6HPN1	EMBL:FN596002	GO:GO:0000244	GO:GO:0000398	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005687	GO:GO:0005690	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0046540	GO:GO:0071011	GO:GO:0097526
InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687	InterPro:IPR029012	InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf
PFAM:PF01798	PFAM:PF09785	PFscan:PS51358	PANTHER:PTHR13904	PANTHER:PTHR13904:SF0	InterPro:Prp31
InterPro:Prp31_C	SMART:SM00931	SUPFAM:SSF89124	UniParc:UPI0002108B41	ArrayExpress:VIT_01s0026g00230	EnsemblPlantsGene:VIT_01s0026g00230
EnsemblPlants:VIT_01s0026g00230.t01	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:-:8867552..8876761

Molecular Weight (calculated)

55600.7 Da

IEP (calculated)

5.110

GRAVY (calculated)

-0.275

Length

509 amino acids

Sequence
(BLAST)

001: MSEFKAALSD PFLADLEELS DNEADLANED DMGVGNMEED DDGEMADIEA LNYDDLDSVS KLQKTQRYID IMQKVEDALE KGSDMSNHGI VLEDDPEYQL
101: IVDCNALSVD IENEIVIIHN FIRDNYRLKF PELESLVHHP IDYARVVKKI GNEMDLTLVD LEGLLPSAII MVVSVTASTT SGKPLPEENL KKTVDACDRA
201: LALDLAKKKV LDFVESRMGY IAPNLSAIVG SAVAAKLMGT AGGLTALAKM PACNVQLLGA KKKNLAGFST ATSQFRVGYI EQTEIFQSTP PSLRMRACRL
301: LAAKSTLSAR VDSTRGDPTG KTGRTLREEI LKKIEKWQEP PPAKQPKPLP VPDSEPKKKR GGLQFSYCHM LDILLVFWGI RDVFSDLTFL RYAITDMRKL
401: ANRMQFGVPE ESSLGDGLGE GYGMLGQAGN GKLRVSVGQS KLAAKVAKKF KEKQYGSSGA TSGLTSSLAF TPVQGIELSN PQAHANQLGS GTQSTYFSEI
501: GTFSKIKRT

Best Arabidopsis Sequence Match ( AT1G60170.1 )
(BLAST)

001: MATLEDSFLA DLDELSDNEA ELDENDGDVG KEEEDVDMDM ADLETLNYDD LDNVSKLQKS QRYADIMHKV EEALGKDSDG AEKGTVLEDD PEYKLIVDCN
101: QLSVDIENEI VIVHNFIKDK YKLKFQELES LVHHPIDYAC VVKKIGNETD LALVDLADLL PSAIIMVVSV TALTTKGSAL PEDVLQKVLE ACDRALDLDS
201: ARKKVLEFVE SKMGSIAPNL SAIVGSAVAA KLMGTAGGLS ALAKMPACNV QVLGHKRKNL AGFSSATSQS RVGYLEQTEI YQSTPPGLQA RAGRLVAAKS
301: TLAARVDATR GDPLGISGKA FREEIRKKIE KWQEPPPARQ PKPLPVPDSE PKKRRGGRRL RKMKERYQVT DMRKLANRMA FGTPEESSLG DGLGEGYGML
401: GQAGSNRLRV SSVPSKLKIN AKVAKKLKER QYAGGATTSG LTSSLAFTPV QGIELCNPQQ ALGLGSGTQS TYFSESGTFS KLKKI

Arabidopsis Description

PRP31Emb1220 [Source:UniProtKB/TrEMBL;Acc:A0A178WCJ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.