Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G60170.1 | Thale cress | nucleus | 54.74 | 30.93 |
| PGSC0003DMT400012169 | Potato | nucleus | 52.92 | 30.02 |
| Solyc08g078430.2.1 | Tomato | nucleus | 52.55 | 29.81 |
| KRH07033 | Soybean | nucleus | 52.55 | 29.63 |
| KRG94405 | Soybean | nucleus | 52.19 | 29.42 |
| OQU82106 | Sorghum | nucleus | 51.09 | 28.93 |
| Zm00001d002716_P002 | Maize | nucleus | 51.09 | 28.87 |
| Os04t0555400-01 | Rice | nucleus | 50.37 | 28.51 |
| GSMUA_Achr3P06150_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 51.09 | 28.46 |
| Os07t0141600-01 | Rice | nucleus | 49.63 | 28.1 |
| TraesCS2B01G046400.1 | Wheat | nucleus | 48.54 | 27.94 |
| VIT_01s0026g00230.t01 | Wine grape | cytosol | 51.46 | 27.7 |
| TraesCS1D01G383400.2 | Wheat | nucleus | 48.91 | 27.63 |
| TraesCS1A01G376100.1 | Wheat | nucleus | 48.91 | 27.63 |
| TraesCS2B01G267700.1 | Wheat | cytosol | 47.08 | 27.56 |
| Solyc07g064070.1.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 45.26 | 27.37 |
| PGSC0003DMT400049589 | Potato | cytosol, nucleus, plastid | 44.53 | 26.52 |
| TraesCS1B01G396600.1 | Wheat | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 48.91 | 25.97 |
| PGSC0003DMT400000083 | Potato | cytosol, nucleus, plasma membrane | 43.07 | 25.88 |
| KXG30826 | Sorghum | nucleus | 40.15 | 25.17 |
| GSMUA_Achr9P14550_001 | Banana | plasma membrane | 37.96 | 23.8 |
| AT5G27120.1 | Thale cress | cytosol | 17.52 | 9.01 |
| AT3G05060.1 | Thale cress | cytosol | 16.79 | 8.63 |
| AT3G12860.1 | Thale cress | nucleus | 15.69 | 8.62 |
| AT1G56110.1 | Thale cress | nucleus | 15.69 | 8.24 |
| AT5G27140.2 | Thale cress | cytosol | 13.5 | 8.22 |
| Os02t0730100-00 | Rice | extracellular | 3.65 | 6.8 |
Protein Annotations
| Gene3D:1.10.150.460 | Gene3D:1.10.287.660 | MapMan:35.1 | EntrezGene:843376 | ProteinID:AEE35056.1 | ArrayExpress:AT1G70400 |
| EnsemblPlantsGene:AT1G70400 | RefSeq:AT1G70400 | TAIR:AT1G70400 | RefSeq:AT1G70400-TAIR-G | EnsemblPlants:AT1G70400.3 | TAIR:AT1G70400.3 |
| Unigene:At.50883 | UniProt:F4I5F1 | GO:GO:0000244 | GO:GO:0000398 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005687 | GO:GO:0005690 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0046540 | GO:GO:0071011 | GO:GO:0097526 |
| InterPro:Helix_hairpin_bin_sf | InterPro:IPR002687 | InterPro:IPR029012 | InterPro:NOSIC | RefSeq:NP_001154463.1 | InterPro:Nop_dom |
| InterPro:Nop_dom_sf | PFAM:PF01798 | PO:PO:0020094 | PANTHER:PTHR13904 | PANTHER:PTHR13904:SF0 | InterPro:Prp31 |
| SMART:SM00931 | SUPFAM:SSF89124 | UniParc:UPI0001A7B278 | SEG:seg | : | : |
Description
CONTAINS InterPro DOMAIN/s: NOSIC (InterPro:IPR012976); BEST Arabidopsis thaliana protein match is: pre-mRNA processing ribonucleoprotein binding region-containing protein (TAIR:AT1G60170.1); Has 479 Blast hits to 479 proteins in 178 species: Archae /.../Bacteria - 0; Metazoa - 125; Fungi - 138; Plants - 124; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink). [Source:TAIR;Acc:AT1G70400]
Coordinates
chr1:-:26531399..26533460
Molecular Weight (calculated)
30449.0 Da
IEP (calculated)
6.506
GRAVY (calculated)
0.068
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMTELNTLT YDDLDSVSKL QKSRRYADIM QQVEEALEGS VLEYKKLIVD CKQLLVDIEN EIVIVQNFIR DKYRVKFQEL ELLVPHPIDY ARVVKRIGNE
101: MDLKLVDLEG LLPSAMIMVL LVTALTTKGN QLPEDVLLKT IDACDRALDL DSARKKPSHA SETPSSSASG YKSLENVKHI NVAANSTIKI TTRDLSLNYK
201: PGGLVLERAA TKWIGGCLNF VVGCIAFCCD WSSSSAFIHC SVTVRLNFCN FASTKQSAAK LSFGFTIANV AFLL
101: MDLKLVDLEG LLPSAMIMVL LVTALTTKGN QLPEDVLLKT IDACDRALDL DSARKKPSHA SETPSSSASG YKSLENVKHI NVAANSTIKI TTRDLSLNYK
201: PGGLVLERAA TKWIGGCLNF VVGCIAFCCD WSSSSAFIHC SVTVRLNFCN FASTKQSAAK LSFGFTIANV AFLL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.