Factsheet for PGSC0003DMT400000083

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012169	Potato	nucleus	68.2	64.39
KRG94405	Soybean	nucleus	67.76	63.58
KRH07033	Soybean	nucleus	67.32	63.17
Os04t0555400-01	Rice	nucleus	66.01	62.19
OQU82106	Sorghum	nucleus	66.01	62.19
Zm00001d002716_P002	Maize	nucleus	65.79	61.86
PGSC0003DMT400049589	Potato	cytosol, nucleus, plastid	61.62	61.09
Os07t0141600-01	Rice	nucleus	64.69	60.95
GSMUA_Achr3P06150_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	64.91	60.16
TraesCS1A01G376100.1	Wheat	nucleus	63.82	60.0
TraesCS1D01G383400.2	Wheat	nucleus	63.82	60.0
TraesCS2B01G046400.1	Wheat	nucleus	62.5	59.87
VIT_01s0026g00230.t01	Wine grape	cytosol	65.79	58.94
TraesCS1B01G396600.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	63.6	56.2
KXG30826	Sorghum	nucleus	52.63	54.92
TraesCS2B01G267700.1	Wheat	cytosol	56.36	54.91
GSMUA_Achr9P14550_001	Banana	plasma membrane	48.03	50.11
Os02t0730100-00	Rice	extracellular	14.25	44.22
AT1G70400.3	Thale cress	cytosol	25.88	43.07
PGSC0003DMT400060016	Potato	cytosol	20.39	17.19
PGSC0003DMT400015638	Potato	cytosol	20.39	16.97
PGSC0003DMT400007150	Potato	nucleus	16.89	13.92

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	MapMan:16.4.1.3.3	GO:GO:0000244	GO:GO:0000398
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0046540	InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687
InterPro:IPR029012	UniProt:M0ZG30	InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf	PFAM:PF01798
PFAM:PF09785	EnsemblPlantsGene:PGSC0003DMG400000023	PGSC:PGSC0003DMG400000023	EnsemblPlants:PGSC0003DMT400000083	PFscan:PS51358	PANTHER:PTHR13904
PANTHER:PTHR13904:SF0	InterPro:Prp31	InterPro:Prp31_C	SMART:SM00931	SUPFAM:SSF89124	UniParc:UPI000295BB5B
SEG:seg	:	:	:	:	:

Description

Pre-mRNA processing ribonucleoprotein, binding region; NOSIC [Source:PGSC_GENE;Acc:PGSC0003DMG400000023]

Coordinates

chr1:+:71887333..71888703

Molecular Weight (calculated)

49907.3 Da

IEP (calculated)

8.603

GRAVY (calculated)

-0.203

Length

456 amino acids

Sequence
(BLAST)

001: MATLAASFLA DLDELSDNEE TPLWIEEHDG ELDDIFKLQN SYCYIDVMHR VEDALSCDRK PILGDSEYDA LIMDCNALSI DIENEIFIIH NFIRDKYRLK
101: FPELESLVNH PIDYARVVKK IGNAMDMTLV DLEGLLPSAV IMVVSVTAST TSGKPLPQDV LHKTLEACDR ALSIDSAKKK VVDFVESRMG FIAPNLSAVV
201: GCAVAAKLIA TAGGLSSLAN IPADCIKLLG AKRNINNLAG FSTAKSHHIG GCYIEETDII QSTPPSLRKQ AYGLLADKSI LAARMDSARG DPTGQYGTSL
301: KGIILKKMEK LQELPPAKQP KPLPVPLDSN AYKKKRGGSR KRKMNKRYEI TERQKLVNRI KFGVAEESSL GDGLGQGYGM LSQADGIGKL RLSVIKKKFK
401: SSSTSIRVYS GLTSSLAFTP VQGIELSNPD QAKHAITRSR STYFSETATF SKIKTT

Best Arabidopsis Sequence Match ( AT1G60170.1 )
(BLAST)

001: MATLEDSFLA DLDELSDNEA ELDENDGDVG KEEEDVDMDM ADLETLNYDD LDNVSKLQKS QRYADIMHKV EEALGKDSDG AEKGTVLEDD PEYKLIVDCN
101: QLSVDIENEI VIVHNFIKDK YKLKFQELES LVHHPIDYAC VVKKIGNETD LALVDLADLL PSAIIMVVSV TALTTKGSAL PEDVLQKVLE ACDRALDLDS
201: ARKKVLEFVE SKMGSIAPNL SAIVGSAVAA KLMGTAGGLS ALAKMPACNV QVLGHKRKNL AGFSSATSQS RVGYLEQTEI YQSTPPGLQA RAGRLVAAKS
301: TLAARVDATR GDPLGISGKA FREEIRKKIE KWQEPPPARQ PKPLPVPDSE PKKRRGGRRL RKMKERYQVT DMRKLANRMA FGTPEESSLG DGLGEGYGML
401: GQAGSNRLRV SSVPSKLKIN AKVAKKLKER QYAGGATTSG LTSSLAFTPV QGIELCNPQQ ALGLGSGTQS TYFSESGTFS KLKKI

Arabidopsis Description

PRP31Emb1220 [Source:UniProtKB/TrEMBL;Acc:A0A178WCJ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.