Factsheet for PGSC0003DMT400049589

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g064070.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	87.39	88.74
PGSC0003DMT400012169	Potato	nucleus	68.91	65.63
OQU82106	Sorghum	nucleus	66.3	63.02
Zm00001d002716_P002	Maize	nucleus	66.3	62.89
KRG94405	Soybean	nucleus	66.3	62.76
KRH07033	Soybean	nucleus	66.3	62.76
Os04t0555400-01	Rice	nucleus	65.87	62.6
Os07t0141600-01	Rice	nucleus	65.22	61.98
PGSC0003DMT400000083	Potato	cytosol, nucleus, plasma membrane	61.09	61.62
GSMUA_Achr3P06150_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	65.65	61.38
TraesCS1A01G376100.1	Wheat	nucleus	64.35	61.03
TraesCS1D01G383400.2	Wheat	nucleus	64.35	61.03
TraesCS2B01G046400.1	Wheat	nucleus	62.83	60.71
VIT_01s0026g00230.t01	Wine grape	cytosol	66.3	59.92
TraesCS2B01G267700.1	Wheat	cytosol	58.26	57.27
TraesCS1B01G396600.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	64.13	57.17
KXG30826	Sorghum	nucleus	53.7	56.52
GSMUA_Achr9P14550_001	Banana	plasma membrane	49.57	52.17
Os02t0730100-00	Rice	extracellular	16.52	51.7
AT1G70400.3	Thale cress	cytosol	26.52	44.53
PGSC0003DMT400060016	Potato	cytosol	18.04	15.34
PGSC0003DMT400015638	Potato	cytosol	17.61	14.78
PGSC0003DMT400007150	Potato	nucleus	16.74	13.92

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	MapMan:16.4.1.3.3	GO:GO:0000244	GO:GO:0000398
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0046540	InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687
InterPro:IPR029012	UniProt:M1BNZ9	InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf	PFAM:PF01798
PFAM:PF09785	EnsemblPlantsGene:PGSC0003DMG400019262	PGSC:PGSC0003DMG400019262	EnsemblPlants:PGSC0003DMT400049589	PFscan:PS51358	PANTHER:PTHR13904
PANTHER:PTHR13904:SF0	InterPro:Prp31	InterPro:Prp31_C	SMART:SM00931	SUPFAM:SSF89124	UniParc:UPI000296C5B2
SEG:seg	:	:	:	:	:

Description

Pre-mRNA processing ribonucleoprotein, binding region; NOSIC [Source:PGSC_GENE;Acc:PGSC0003DMG400019262]

Coordinates

chr7:+:54245164..54246715

Molecular Weight (calculated)

50580.8 Da

IEP (calculated)

8.877

GRAVY (calculated)

-0.282

Length

460 amino acids

Sequence
(BLAST)

001: MAALDSFMAD LEELDELSDN THYVHGKAFN YDLDNVSMLQ KSRNYIDIMQ KVEDAIISAN KGDVIVEEDD HKYKLIEDCN ALSVEIEDEI AIIHNFIRDK
101: YRLKFPELDS LVNHPIDYAR VVKKIGNETD LTLVDLQELL PSAIIMVVSV TASATSGKPL PEDVLQRTLE ACDRTLALDS SKKKVVDFVE SRMNDIAPNM
201: SGVVGSAVAA KLMCSAGGLS LLANMPADNV RNLGGKRKNL AGFSTASASR FCYIEETDIF QSTPPSLRVK VCRMLANKAI LAARMDLNKA GIFNFKEEIC
301: KTIEKLQELP PARLPKPLPV PDFRSKKQRG GIRHSKRKDR YQVTDAQKLR NRVKFGVPEE SSLGDGLGVG YGMLGQAGSG KLRVSARQNK KIAKISKVKS
401: YGSNGAAAIS GLMSSSFAFT PVQGIELSNP QAYSDGTQST YFSETGTFSK IKRQKSFFGV

Best Arabidopsis Sequence Match ( AT1G60170.1 )
(BLAST)

001: MATLEDSFLA DLDELSDNEA ELDENDGDVG KEEEDVDMDM ADLETLNYDD LDNVSKLQKS QRYADIMHKV EEALGKDSDG AEKGTVLEDD PEYKLIVDCN
101: QLSVDIENEI VIVHNFIKDK YKLKFQELES LVHHPIDYAC VVKKIGNETD LALVDLADLL PSAIIMVVSV TALTTKGSAL PEDVLQKVLE ACDRALDLDS
201: ARKKVLEFVE SKMGSIAPNL SAIVGSAVAA KLMGTAGGLS ALAKMPACNV QVLGHKRKNL AGFSSATSQS RVGYLEQTEI YQSTPPGLQA RAGRLVAAKS
301: TLAARVDATR GDPLGISGKA FREEIRKKIE KWQEPPPARQ PKPLPVPDSE PKKRRGGRRL RKMKERYQVT DMRKLANRMA FGTPEESSLG DGLGEGYGML
401: GQAGSNRLRV SSVPSKLKIN AKVAKKLKER QYAGGATTSG LTSSLAFTPV QGIELCNPQQ ALGLGSGTQS TYFSESGTFS KLKKI

Arabidopsis Description

PRP31Emb1220 [Source:UniProtKB/TrEMBL;Acc:A0A178WCJ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.