Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G046400.1 | Wheat | nucleus | 84.4 | 82.98 |
| Os04t0555400-01 | Rice | nucleus | 83.55 | 80.79 |
| OQU82106 | Sorghum | nucleus | 83.55 | 80.79 |
| Zm00001d002716_P002 | Maize | nucleus | 83.55 | 80.62 |
| Os07t0141600-01 | Rice | nucleus | 82.91 | 80.17 |
| TraesCS1B01G396600.1 | Wheat | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 85.9 | 77.91 |
| GSMUA_Achr3P06150_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 77.78 | 73.98 |
| PGSC0003DMT400012169 | Potato | nucleus | 73.93 | 71.64 |
| Solyc08g078430.2.1 | Tomato | nucleus | 73.72 | 71.43 |
| KRG94405 | Soybean | nucleus | 73.93 | 71.19 |
| KRH07033 | Soybean | nucleus | 73.93 | 71.19 |
| VIT_01s0026g00230.t01 | Wine grape | cytosol | 75.21 | 69.16 |
| CDY72546 | Canola | nucleus | 60.26 | 67.14 |
| Bra031522.1-P | Field mustard | nucleus | 67.73 | 65.23 |
| AT1G60170.1 | Thale cress | nucleus | 66.24 | 63.92 |
| CDY04340 | Canola | plasma membrane | 64.74 | 63.79 |
| CDY24519 | Canola | nucleus | 64.74 | 62.35 |
| GSMUA_Achr9P14550_001 | Banana | plasma membrane | 57.91 | 62.01 |
| CDY54131 | Canola | mitochondrion | 64.74 | 61.34 |
| Solyc07g064070.1.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 56.41 | 58.28 |
| PGSC0003DMT400049589 | Potato | cytosol, nucleus, plastid | 57.27 | 58.26 |
| PGSC0003DMT400000083 | Potato | cytosol, nucleus, plasma membrane | 54.91 | 56.36 |
| CDY36542 | Canola | nucleus | 50.43 | 56.32 |
| CDY39628 | Canola | nucleus | 54.7 | 56.14 |
| Bra026149.1-P | Field mustard | nucleus | 57.48 | 55.58 |
| AT1G70400.3 | Thale cress | cytosol | 27.56 | 47.08 |
| TraesCS1B01G379200.1 | Wheat | cytosol | 17.73 | 14.82 |
| TraesCS2B01G148000.1 | Wheat | nucleus | 16.24 | 14.07 |
| TraesCS1B01G401000.1 | Wheat | nucleus | 16.45 | 14.03 |
| TraesCS2B01G147900.1 | Wheat | plastid | 13.68 | 13.82 |
| TraesCS2B01G139100.1 | Wheat | endoplasmic reticulum, plastid | 17.09 | 13.18 |
Protein Annotations
| Gene3D:1.10.150.460 | Gene3D:1.10.246.90 | Gene3D:1.10.287.660 | MapMan:16.4.1.3.3 | GO:GO:0000244 | GO:GO:0000398 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0046540 | InterPro:Helix_hairpin_bin_sf | InterPro:IPR002687 |
| InterPro:IPR029012 | InterPro:NOSIC | InterPro:Nop_dom | InterPro:Nop_dom_sf | PFAM:PF01798 | PFAM:PF09785 |
| PFscan:PS51358 | PANTHER:PTHR13904 | PANTHER:PTHR13904:SF0 | InterPro:Prp31 | InterPro:Prp31_C | SMART:SM00931 |
| SUPFAM:SSF89124 | EnsemblPlantsGene:TraesCS2B01G267700 | EnsemblPlants:TraesCS2B01G267700.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr2B:+:360971784..360979940
Molecular Weight (calculated)
51163.5 Da
IEP (calculated)
6.640
GRAVY (calculated)
-0.276
Length
468 amino acids
Sequence
(BLAST)
(BLAST)
001: MANLADSFLA DLDELYRKRL SPRFTNKANR QRAQIHNQEE DNAEAVGVDE DGDDDMPDLE SLNYDDLDSV SKLHKTQRYI DIMQKVEGAL EKGTDLSNQG
101: FILEEDPEYQ LIVDCNALSV DIENELIIVH NFIRDKYRLK FPELESLVHH PIDYAHVVKK IANEMDSTLV DLEGLLPSAV IMVVSVTALT TSGKPLSEEN
201: LVKTIEACYR ALNLDAAKKK VLDFVEGRMG YIAPNLSGIV GSAVAAKLMG IAGGLGALAK MPACNFRVGY LEQTKVFQST PPAPRTRACR LIAAKSTLAA
301: RINSIRGDPT GKAGRNLLEE IRKKIEKWQE PPPAKLPKPL LYAVTDMMKL ANRMQFGIPE ESSLVQLVLT VCDGLGEGYG MLGQAGSGKL RVSAAQNKFS
401: AKVDKKFKEK SYGRSGATSG LTSSLAFTPV QGIELSNPQA HGNLLGSGIQ STYFSETGTF SRIRRPGG
101: FILEEDPEYQ LIVDCNALSV DIENELIIVH NFIRDKYRLK FPELESLVHH PIDYAHVVKK IANEMDSTLV DLEGLLPSAV IMVVSVTALT TSGKPLSEEN
201: LVKTIEACYR ALNLDAAKKK VLDFVEGRMG YIAPNLSGIV GSAVAAKLMG IAGGLGALAK MPACNFRVGY LEQTKVFQST PPAPRTRACR LIAAKSTLAA
301: RINSIRGDPT GKAGRNLLEE IRKKIEKWQE PPPAKLPKPL LYAVTDMMKL ANRMQFGIPE ESSLVQLVLT VCDGLGEGYG MLGQAGSGKL RVSAAQNKFS
401: AKVDKKFKEK SYGRSGATSG LTSSLAFTPV QGIELSNPQA HGNLLGSGIQ STYFSETGTF SRIRRPGG
001: MATLEDSFLA DLDELSDNEA ELDENDGDVG KEEEDVDMDM ADLETLNYDD LDNVSKLQKS QRYADIMHKV EEALGKDSDG AEKGTVLEDD PEYKLIVDCN
101: QLSVDIENEI VIVHNFIKDK YKLKFQELES LVHHPIDYAC VVKKIGNETD LALVDLADLL PSAIIMVVSV TALTTKGSAL PEDVLQKVLE ACDRALDLDS
201: ARKKVLEFVE SKMGSIAPNL SAIVGSAVAA KLMGTAGGLS ALAKMPACNV QVLGHKRKNL AGFSSATSQS RVGYLEQTEI YQSTPPGLQA RAGRLVAAKS
301: TLAARVDATR GDPLGISGKA FREEIRKKIE KWQEPPPARQ PKPLPVPDSE PKKRRGGRRL RKMKERYQVT DMRKLANRMA FGTPEESSLG DGLGEGYGML
401: GQAGSNRLRV SSVPSKLKIN AKVAKKLKER QYAGGATTSG LTSSLAFTPV QGIELCNPQQ ALGLGSGTQS TYFSESGTFS KLKKI
101: QLSVDIENEI VIVHNFIKDK YKLKFQELES LVHHPIDYAC VVKKIGNETD LALVDLADLL PSAIIMVVSV TALTTKGSAL PEDVLQKVLE ACDRALDLDS
201: ARKKVLEFVE SKMGSIAPNL SAIVGSAVAA KLMGTAGGLS ALAKMPACNV QVLGHKRKNL AGFSSATSQS RVGYLEQTEI YQSTPPGLQA RAGRLVAAKS
301: TLAARVDATR GDPLGISGKA FREEIRKKIE KWQEPPPARQ PKPLPVPDSE PKKRRGGRRL RKMKERYQVT DMRKLANRMA FGTPEESSLG DGLGEGYGML
401: GQAGSNRLRV SSVPSKLKIN AKVAKKLKER QYAGGATTSG LTSSLAFTPV QGIELCNPQQ ALGLGSGTQS TYFSESGTFS KLKKI
Arabidopsis Description
PRP31Emb1220 [Source:UniProtKB/TrEMBL;Acc:A0A178WCJ2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.