Factsheet for Solyc08g078430.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012169	Potato	nucleus	99.17	99.17
KRG94405	Soybean	nucleus	88.82	88.27
KRH07033	Soybean	nucleus	88.82	88.27
GSMUA_Achr3P06150_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	87.58	85.98
OQU82106	Sorghum	nucleus	85.51	85.33
Zm00001d002716_P002	Maize	nucleus	85.09	84.74
Os04t0555400-01	Rice	nucleus	83.85	83.68
Os07t0141600-01	Rice	nucleus	83.85	83.68
VIT_01s0026g00230.t01	Wine grape	cytosol	87.58	83.1
TraesCS1A01G376100.1	Wheat	nucleus	81.99	81.65
TraesCS1D01G383400.2	Wheat	nucleus	81.99	81.65
Solyc01g094310.1.1	Tomato	cytosol	15.32	81.32
TraesCS2B01G046400.1	Wheat	nucleus	80.12	81.3
TraesCS1B01G396600.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	81.78	76.55
TraesCS2B01G267700.1	Wheat	cytosol	71.43	73.72
GSMUA_Achr9P14550_001	Banana	plasma membrane	64.6	71.4
Solyc07g064070.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	65.01	69.32
KXG30826	Sorghum	nucleus	61.7	68.19
Solyc01g094300.1.1	Tomato	extracellular	27.74	61.75
Os02t0730100-00	Rice	extracellular	18.43	60.54
AT1G70400.3	Thale cress	cytosol	29.81	52.55
Solyc05g055880.2.1	Tomato	nucleus	18.63	17.54
Solyc09g083080.2.1	Tomato	nucleus	19.46	17.03
Solyc01g100570.2.1	Tomato	nucleus	18.43	16.09

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	MapMan:16.4.1.3.3	ncoils:Coil	GO:GO:0000244
GO:GO:0000398	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005687
GO:GO:0005690	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0046540	GO:GO:0071011	GO:GO:0097526	InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687	InterPro:IPR029012
UniProt:K4CNK2	InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf	PFAM:PF01798	PFAM:PF09785
PFscan:PS51358	PANTHER:PTHR13904	PANTHER:PTHR13904:SF0	InterPro:Prp31	InterPro:Prp31_C	SMART:SM00931
SUPFAM:SSF89124	EnsemblPlantsGene:Solyc08g078430.2	EnsemblPlants:Solyc08g078430.2.1	UniParc:UPI000276CAC6	SEG:seg	:

Description

No Description!

Coordinates

chr8:-:62240043..62244273

Molecular Weight (calculated)

52629.0 Da

IEP (calculated)

5.665

GRAVY (calculated)

-0.341

Length

483 amino acids

Sequence
(BLAST)

001: MATLADSFLA DLDELSDNEA DVIDEENLDV DQMEEDGDLA DIEALNYDDL DNVSKLQKSR RYVEIMQKVE DALEKESDVT NKGVVLEDEP EYQLIVDCNA
101: LSVDIENEIV IIHNFIRDKY RLKFPELESL VHHPIDYARV VKKIGNEIDL TLVDLEGLLP SAIIMVVSVT ASTTSGKPLP EDVLQKTVEA CDRALALDSA
201: KKKVLDFVES RMGYIAPNLS AVVGSAVAAK LMGTAGGLSS LAKMPACNVQ LLGAKRKNLA GFSTATSQFH VGYIEQTELF QSTPPSLRMR ACRLLAAKST
301: LAARVDSING DPVGKTGRSL REEIRKKIEK WQEPPPAKQP KPLPVPDSEP KKKRGGRRLR KMKERYAITD MRKLANRMQF GIPEESSLGD GLGEGYGMLG
401: QAGSGKLRVS VGQSKLAAKV AKKFKEKSYG SSGATSGLTS SLAFTPVQGI ELSNPQALAN QLGSGTQSTY FSDTGTFSKI KRT

Best Arabidopsis Sequence Match ( AT1G60170.1 )
(BLAST)

001: MATLEDSFLA DLDELSDNEA ELDENDGDVG KEEEDVDMDM ADLETLNYDD LDNVSKLQKS QRYADIMHKV EEALGKDSDG AEKGTVLEDD PEYKLIVDCN
101: QLSVDIENEI VIVHNFIKDK YKLKFQELES LVHHPIDYAC VVKKIGNETD LALVDLADLL PSAIIMVVSV TALTTKGSAL PEDVLQKVLE ACDRALDLDS
201: ARKKVLEFVE SKMGSIAPNL SAIVGSAVAA KLMGTAGGLS ALAKMPACNV QVLGHKRKNL AGFSSATSQS RVGYLEQTEI YQSTPPGLQA RAGRLVAAKS
301: TLAARVDATR GDPLGISGKA FREEIRKKIE KWQEPPPARQ PKPLPVPDSE PKKRRGGRRL RKMKERYQVT DMRKLANRMA FGTPEESSLG DGLGEGYGML
401: GQAGSNRLRV SSVPSKLKIN AKVAKKLKER QYAGGATTSG LTSSLAFTPV QGIELCNPQQ ALGLGSGTQS TYFSESGTFS KLKKI

Arabidopsis Description

PRP31Emb1220 [Source:UniProtKB/TrEMBL;Acc:A0A178WCJ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.