Factsheet for Solyc01g094300.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 3
extracellular 5
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0039g02100.t01	Wine grape	plastid	18.89	47.67
TraesCS2A01G254400.1	Wheat	cytosol	24.42	42.74
TraesCS2D01G254900.1	Wheat	cytosol	23.96	41.94
Solyc08g078430.2.1	Tomato	nucleus	61.75	27.74
Solyc07g064070.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	53.0	25.39
Solyc05g055880.2.1	Tomato	nucleus	21.66	9.16
Solyc09g083080.2.1	Tomato	nucleus	22.12	8.7
Solyc01g100570.2.1	Tomato	nucleus	21.2	8.32
Solyc01g094310.1.1	Tomato	cytosol	0.46	1.1

Protein Annotations

Gene3D:1.10.246.90	MapMan:35.1	GO:GO:0000244	GO:GO:0000398	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005687	GO:GO:0005690	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0046540	GO:GO:0071011	GO:GO:0097526
InterPro:IPR002687	UniProt:K4AZH1	InterPro:Nop_dom	InterPro:Nop_dom_sf	PFAM:PF01798	PFAM:PF09785
PFscan:PS51358	PANTHER:PTHR13904	PANTHER:PTHR13904:SF0	InterPro:Prp31	InterPro:Prp31_C	SUPFAM:SSF89124
EnsemblPlantsGene:Solyc01g094300.1	EnsemblPlants:Solyc01g094300.1.1	UniParc:UPI00027687B6	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:-:85832551..85833320

Molecular Weight (calculated)

22971.8 Da

IEP (calculated)

10.325

GRAVY (calculated)

0.002

Length

217 amino acids

Sequence
(BLAST)

001: MGFIAPNLSA VVGSAVAAKL IATAGGLSSL VNIPADCINL LGAKTNIHNL AGFSFSTAMF HHIGGCSIEE TDIIQSTPPS LRKKAYGLLA DKCILAARVD
101: SARGDPTGQY GTSLKGIVLF LRRWRNCKSY LHSLGDGLGQ GYGMLSQADG IGKLRLSAIK KKFKSSTTST RVYSGLTSSL AFTPIQGIEL SNPDQAKHAT
201: TSHYFSETAT FSKIKKK

Best Arabidopsis Sequence Match ( AT1G60170.1 )
(BLAST)

001: MATLEDSFLA DLDELSDNEA ELDENDGDVG KEEEDVDMDM ADLETLNYDD LDNVSKLQKS QRYADIMHKV EEALGKDSDG AEKGTVLEDD PEYKLIVDCN
101: QLSVDIENEI VIVHNFIKDK YKLKFQELES LVHHPIDYAC VVKKIGNETD LALVDLADLL PSAIIMVVSV TALTTKGSAL PEDVLQKVLE ACDRALDLDS
201: ARKKVLEFVE SKMGSIAPNL SAIVGSAVAA KLMGTAGGLS ALAKMPACNV QVLGHKRKNL AGFSSATSQS RVGYLEQTEI YQSTPPGLQA RAGRLVAAKS
301: TLAARVDATR GDPLGISGKA FREEIRKKIE KWQEPPPARQ PKPLPVPDSE PKKRRGGRRL RKMKERYQVT DMRKLANRMA FGTPEESSLG DGLGEGYGML
401: GQAGSNRLRV SSVPSKLKIN AKVAKKLKER QYAGGATTSG LTSSLAFTPV QGIELCNPQQ ALGLGSGTQS TYFSESGTFS KLKKI

Arabidopsis Description

PRP31Emb1220 [Source:UniProtKB/TrEMBL;Acc:A0A178WCJ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.