Factsheet for Solyc05g055880.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, nucleus, plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060016	Potato	cytosol	95.91	90.94
Zm00001d038818_P001	Maize	cytosol	47.56	84.43
Zm00001d034259_P001	Maize	cytosol	23.59	82.31
Solyc09g083080.2.1	Tomato	nucleus	88.5	82.25
Zm00001d007484_P001	Maize	cytosol	51.85	77.55
VIT_14s0030g01270.t01	Wine grape	nucleus	84.8	75.92
Zm00001d011996_P002	Maize	cytosol	44.44	73.79
KRH29399	Soybean	nucleus	79.14	73.68
CDX80674	Canola	cytosol	76.8	73.51
KRH24415	Soybean	nucleus	79.34	73.2
AT3G05060.1	Thale cress	cytosol	76.02	73.17
CDY00004	Canola	nucleus	76.22	72.95
CDY19706	Canola	nucleus	76.02	72.9
AT5G27120.1	Thale cress	cytosol	75.63	72.8
Bra036111.1-P	Field mustard	nucleus	75.83	72.57
CDX86179	Canola	nucleus	75.83	72.44
Bra009978.1-P	Field mustard	nucleus	75.83	72.44
TraesCS2D01G120400.1	Wheat	nucleus	78.75	72.14
TraesCS2A01G119400.1	Wheat	nucleus	78.75	72.14
HORVU2Hr1G020690.6	Barley	cytosol	75.44	71.67
TraesCS1B01G379200.1	Wheat	cytosol	78.17	71.61
Os03t0350100-02	Rice	nucleus	79.14	71.48
HORVU4Hr1G041810.4	Barley	cytosol	75.63	71.45
GSMUA_Achr11P...	Banana	cytosol	81.48	71.45
GSMUA_Achr8P09940_001	Banana	cytosol	81.68	71.26
CDY52494	Canola	nucleus	73.68	71.19
Os03t0350300-01	Rice	nucleus	78.75	71.13
Zm00001d047481_P003	Maize	plastid	76.8	70.11
KXG39385	Sorghum	cytosol	77.58	69.95
Zm00001d029144_P004	Maize	cytosol	76.8	69.86
Bra020601.1-P	Field mustard	nucleus	66.28	69.67
KXG34017	Sorghum	cytosol	77.0	69.54
TraesCS4A01G141500.1	Wheat	nucleus	77.0	68.34
CDY50583	Canola	cytosol, mitochondrion, nucleus, plastid	69.79	68.19
TraesCS2B01G139100.1	Wheat	endoplasmic reticulum, plastid	78.36	66.23
AT5G27140.2	Thale cress	cytosol	55.17	62.89
Zm00001d031027_P001	Maize	plastid	60.82	52.79
Zm00001d036776_P001	Maize	mitochondrion	59.65	49.76
Solyc01g100570.2.1	Tomato	nucleus	41.52	38.52
Solyc01g094310.1.1	Tomato	cytosol	4.48	25.27
Solyc01g094300.1.1	Tomato	extracellular	9.16	21.66
Solyc08g078430.2.1	Tomato	nucleus	17.54	18.63
Solyc07g064070.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	15.2	17.22

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	MapMan:17.1.1.2.1.5.3	ncoils:Coil	GO:GO:0000154
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0030515	GO:GO:0031428	GO:GO:0032040	InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687
InterPro:IPR029012	UniProt:K4C2R3	InterPro:NOP5_N	InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf
PFAM:PF01798	PFAM:PF08156	PFscan:PS51358	PANTHER:PTHR10894	PANTHER:PTHR10894:SF1	SMART:SM00931
SUPFAM:SSF89124	EnsemblPlantsGene:Solyc05g055880.2	EnsemblPlants:Solyc05g055880.2.1	UniParc:UPI0002767442	SEG:seg	:

Description

No Description!

Coordinates

chr5:-:65341103..65346163

Molecular Weight (calculated)

56543.3 Da

IEP (calculated)

9.630

GRAVY (calculated)

-0.466

Length

513 amino acids

Sequence
(BLAST)

001: MLVLFETPAG FALFKVLDEG KLSKVEDLSK EFTTSDSARK VVKLKAFSKF ENTSEALSAA TLLIDSKPSK GLRKFLKAHC DGETLGIADS KLGNAIKEKL
101: QIECVHNNVV MELMRGLRSQ LTELISGLAT QDLAPMSLGL SHSLSRYKLK FSPDKVDTMI VQAIGLLDDL DKELNTYAMR VREWYGWHFP ELAKIVQDNI
201: LYAKAVKLMG DRVNAAKLDF SEILPEEVEA ELKEAAMISM GTEVSDLDLE NIKDLCSQVL SFSEYRAQLY DYLKSRMNTI APNLTALVGE LVGARLIAHG
301: GSLTNLAKQP GSTVQILGAE KALFRALKTK HATPKYGLIY HASLIGQAAP KHKGKIARSL ASKASLAIRY DALGDGQDNT MGLENRVKLE ARLRALEGKE
401: LGKSAGSAKG KPKIEAYDKD RKKGAGALIT PAKVYNPSAD AVLGCIDNEE QKMSVEETGT KKEKKKKKHA ATEENVEVEK SKKKKRKHSD DDDESETADK
501: KKEKKQKKKK TEE

Best Arabidopsis Sequence Match ( AT3G05060.1 )
(BLAST)

001: MVLVLYETAA GFALFKVKDE GKMANVEDLC KEFDTPDSAR KMVKLKAFEK FDNTSEALEA VAKLLEGAPS KGLRKFLKAN CQGETLAVAD SKLGNVIKEK
101: LKIDCIHNNA VMELLRGVRS QFTELISGLG DQDLAPMSLG LSHSLARYKL KFSSDKVDTM IIQAIGLLDD LDKELNTYAM RVREWYGWHF PELAKIISDN
201: ILYAKSVKLM GNRVNAAKLD FSEILADEIE ADLKDAAVIS MGTEVSDLDL LHIRELCDQV LSLSEYRAQL YDYLKSRMNT IAPNLTALVG ELVGARLISH
301: GGSLLNLSKQ PGSTVQILGA EKALFRALKT KHATPKYGLI FHASLVGQAA PKHKGKISRS LAAKTVLAIR VDALGDSQDN TMGLENRAKL EARLRNLEGK
401: DLGRLSGSSK GKPKIEVYNK DKKMGSGGLI TPAKTYNTAA DSLLGETSAK SEEPSKKKDK KKKKKVEEEK PEEEEPSEKK KKKKAEAETE AVVEVAKEEK
501: KKNKKKRKHE EEETTETPAK KKDKKEKKKK SKD

Arabidopsis Description

NOP5-2Probable nucleolar protein 5-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.