Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19706 | Canola | nucleus | 89.31 | 88.97 |
| CDX80674 | Canola | cytosol | 89.31 | 88.81 |
| CDY00004 | Canola | nucleus | 89.12 | 88.62 |
| Bra009978.1-P | Field mustard | nucleus | 89.12 | 88.45 |
| CDX86179 | Canola | nucleus | 89.12 | 88.45 |
| Bra036111.1-P | Field mustard | nucleus | 88.56 | 88.06 |
| CDY52494 | Canola | nucleus | 87.62 | 87.95 |
| Bra020601.1-P | Field mustard | nucleus | 80.3 | 87.7 |
| CDY50583 | Canola | cytosol, mitochondrion, nucleus, plastid | 83.86 | 85.14 |
| AT3G05060.1 | Thale cress | cytosol | 84.43 | 84.43 |
| Zm00001d034259_P001 | Maize | cytosol | 22.89 | 82.99 |
| Zm00001d038818_P001 | Maize | cytosol | 42.03 | 77.51 |
| Zm00001d007484_P001 | Maize | cytosol | 49.16 | 76.38 |
| Solyc05g055880.2.1 | Tomato | nucleus | 72.8 | 75.63 |
| PGSC0003DMT400060016 | Potato | cytosol | 74.3 | 73.2 |
| PGSC0003DMT400015638 | Potato | cytosol | 74.48 | 72.45 |
| Zm00001d011996_P002 | Maize | cytosol | 41.65 | 71.84 |
| VIT_14s0030g01270.t01 | Wine grape | nucleus | 76.36 | 71.03 |
| Solyc09g083080.2.1 | Tomato | nucleus | 73.55 | 71.01 |
| KRH24415 | Soybean | nucleus | 73.73 | 70.68 |
| KRH29399 | Soybean | nucleus | 72.98 | 70.6 |
| TraesCS2A01G119400.1 | Wheat | nucleus | 72.61 | 69.11 |
| TraesCS2D01G120400.1 | Wheat | nucleus | 72.23 | 68.75 |
| HORVU4Hr1G041810.4 | Barley | cytosol | 69.98 | 68.69 |
| AT5G27140.2 | Thale cress | cytosol | 57.97 | 68.67 |
| TraesCS1B01G379200.1 | Wheat | cytosol | 72.05 | 68.57 |
| HORVU2Hr1G020690.6 | Barley | cytosol | 69.04 | 68.15 |
| Os03t0350300-01 | Rice | nucleus | 71.67 | 67.25 |
| Os03t0350100-02 | Rice | nucleus | 71.67 | 67.25 |
| Zm00001d047481_P003 | Maize | plastid | 70.36 | 66.73 |
| GSMUA_Achr11P... | Banana | cytosol | 73.17 | 66.67 |
| GSMUA_Achr8P09940_001 | Banana | cytosol | 73.17 | 66.33 |
| KXG39385 | Sorghum | cytosol | 70.73 | 66.26 |
| Zm00001d029144_P004 | Maize | cytosol | 69.79 | 65.96 |
| KXG34017 | Sorghum | cytosol | 69.79 | 65.49 |
| TraesCS4A01G141500.1 | Wheat | nucleus | 70.73 | 65.22 |
| TraesCS2B01G139100.1 | Wheat | endoplasmic reticulum, plastid | 72.23 | 63.43 |
| Zm00001d031027_P001 | Maize | plastid | 53.28 | 48.05 |
| Zm00001d036776_P001 | Maize | mitochondrion | 52.91 | 45.85 |
| AT1G56110.1 | Thale cress | nucleus | 41.46 | 42.34 |
| AT3G12860.1 | Thale cress | nucleus | 38.84 | 41.48 |
| AT1G60170.1 | Thale cress | nucleus | 18.95 | 20.82 |
| AT1G70400.3 | Thale cress | cytosol | 9.01 | 17.52 |
Protein Annotations
| Gene3D:1.10.150.460 | Gene3D:1.10.246.90 | Gene3D:1.10.287.660 | MapMan:17.1.1.2.1.5.3 | EntrezGene:832770 | ProteinID:AAB61073.1 |
| ProteinID:AED93652.1 | EMBL:AF302490 | ArrayExpress:AT5G27120 | EnsemblPlantsGene:AT5G27120 | RefSeq:AT5G27120 | TAIR:AT5G27120 |
| RefSeq:AT5G27120-TAIR-G | EnsemblPlants:AT5G27120.1 | TAIR:AT5G27120.1 | EMBL:AY074281 | EMBL:AY096684 | EMBL:BT002060 |
| GO:GO:0000154 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009506 | GO:GO:0009987 | GO:GO:0030515 | GO:GO:0031428 | GO:GO:0032040 |
| GO:GO:0042254 | InterPro:Helix_hairpin_bin_sf | InterPro:IPR002687 | InterPro:IPR029012 | InterPro:NOP5_N | InterPro:NOSIC |
| RefSeq:NP_198064.1 | InterPro:Nop_dom | InterPro:Nop_dom_sf | UniProt:O04658 | PFAM:PF01798 | PFAM:PF08156 |
| PO:PO:0000293 | PFscan:PS51358 | PANTHER:PTHR10894 | PANTHER:PTHR10894:SF1 | SMART:SM00931 | SUPFAM:SSF89124 |
| UniParc:UPI00000A2297 | SEG:seg | : | : | : | : |
Description
NOP5-1Probable nucleolar protein 5-1 [Source:UniProtKB/Swiss-Prot;Acc:O04658]
Coordinates
chr5:+:9540861..9544065
Molecular Weight (calculated)
58758.4 Da
IEP (calculated)
9.950
GRAVY (calculated)
-0.471
Length
533 amino acids
Sequence
(BLAST)
(BLAST)
001: MLILFETPGG FAIFKVLNEG KLSNVEDLGN EFSTAKLARK MVKLVAFDKF DNTAEALEAV AKLLEGTPSK GLRKFLKANC VGETLAVADS KLGNIIKEKL
101: KIVCVHNNAV MELLRGIRSQ LTELISGLGD QDLGPMSLGL SHSLARYKLK FSSDKVDTMI IQAIGLLDDL DKELNTYAMR VREWFGWHFP ELAKIVQDNI
201: LYAKAVKLMG NRINAAKLDF SEILADEIEA ELKEAAVISM GTEVSDLDLL HIRELCDQVL SLAEYRAQLY DYLKSRMNTI APNLTALVGE LVGARLISHG
301: GSLLNLAKQP GSTVQILGAE KALFRALKTK HATPKYGLIF HASVVGQAAP KNKGKISRSL AAKSVLAIRC DALGDSQDNT MGVENRLKLE ARLRTLEGKD
401: LGRLSGSAKG KPKIEVYDKD KKKGSGGLIT PAKTYNTAAD SLLQTPTVDS ENGVKEKKDK KKKKKADDEE EAKTEEPSKK KSNKKKTEAE PETAEEPAKK
501: EKKKKRKHEE EETEMPAKKK EKSEKKKKKK TEV
101: KIVCVHNNAV MELLRGIRSQ LTELISGLGD QDLGPMSLGL SHSLARYKLK FSSDKVDTMI IQAIGLLDDL DKELNTYAMR VREWFGWHFP ELAKIVQDNI
201: LYAKAVKLMG NRINAAKLDF SEILADEIEA ELKEAAVISM GTEVSDLDLL HIRELCDQVL SLAEYRAQLY DYLKSRMNTI APNLTALVGE LVGARLISHG
301: GSLLNLAKQP GSTVQILGAE KALFRALKTK HATPKYGLIF HASVVGQAAP KNKGKISRSL AAKSVLAIRC DALGDSQDNT MGVENRLKLE ARLRTLEGKD
401: LGRLSGSAKG KPKIEVYDKD KKKGSGGLIT PAKTYNTAAD SLLQTPTVDS ENGVKEKKDK KKKKKADDEE EAKTEEPSKK KSNKKKTEAE PETAEEPAKK
501: EKKKKRKHEE EETEMPAKKK EKSEKKKKKK TEV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.