Factsheet for HORVU2Hr1G020690.6

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G120400.1	Wheat	nucleus	93.33	90.0
TraesCS2A01G119400.1	Wheat	nucleus	93.15	89.82
TraesCS1B01G379200.1	Wheat	cytosol	92.78	89.46
TraesCS2B01G139100.1	Wheat	endoplasmic reticulum, plastid	92.78	82.54
HORVU4Hr1G041810.4	Barley	cytosol	81.3	80.85
Solyc05g055880.2.1	Tomato	nucleus	71.67	75.44
PGSC0003DMT400015638	Potato	cytosol	75.0	73.91
PGSC0003DMT400060016	Potato	cytosol	73.33	73.2
GSMUA_Achr11P...	Banana	cytosol	78.7	72.65
Solyc09g083080.2.1	Tomato	nucleus	74.26	72.64
GSMUA_Achr8P09940_001	Banana	cytosol	78.7	72.28
KRH29399	Soybean	nucleus	73.52	72.05
KRH24415	Soybean	nucleus	73.52	71.4
VIT_14s0030g01270.t01	Wine grape	nucleus	75.56	71.2
CDX80674	Canola	cytosol	70.56	71.08
CDY19706	Canola	nucleus	70.19	70.84
CDY00004	Canola	nucleus	70.19	70.71
CDX86179	Canola	nucleus	70.19	70.58
Bra009978.1-P	Field mustard	nucleus	70.19	70.58
Bra036111.1-P	Field mustard	nucleus	69.81	70.34
AT3G05060.1	Thale cress	cytosol	68.89	69.79
AT5G27120.1	Thale cress	cytosol	68.15	69.04
CDY52494	Canola	nucleus	67.41	68.55
Bra020601.1-P	Field mustard	nucleus	61.11	67.62
CDY50583	Canola	cytosol, mitochondrion, nucleus, plastid	64.81	66.67
AT5G27140.2	Thale cress	cytosol	51.11	61.33
HORVU2Hr1G022120.1	Barley	mitochondrion	33.15	35.03
HORVU2Hr1G022140.3	Barley	nucleus	36.11	34.82
HORVU1Hr1G083960.6	Barley	nucleus	36.11	34.64
HORVU2Hr1G022110.2	Barley	plastid	34.63	34.19

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	MapMan:17.1.1.2.1.5.3	UniProt:A0A287HAK5	ncoils:Coil
EnsemblPlantsGene:HORVU2Hr1G020690	EnsemblPlants:HORVU2Hr1G020690.6	InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687	InterPro:IPR029012	InterPro:NOP5_N
InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf	PFAM:PF01798	PFAM:PF08156	PFscan:PS51358
PANTHER:PTHR10894	PANTHER:PTHR10894:SF1	SMART:SM00931	SUPFAM:SSF89124	UniParc:UPI000B46C2A2	SEG:seg

Description

No Description!

Coordinates

chrchr2H:-:57310277..57313702

Molecular Weight (calculated)

59618.8 Da

IEP (calculated)

8.781

GRAVY (calculated)

-0.456

Length

540 amino acids

Sequence
(BLAST)

001: MLVLFETPAG FALFKVLDEG KLSSVEDLWK DFASSDKARK VVELKAFNKF ENTSDALSAA TLLIDSKPSK GLRKFLQKHC DGETLAVADS KLGNAIKEKL
101: KIDCLHNSAV MELMRGLRNQ LTELMSGLAE HDLGPMSLGL SHSLSRYKLK FSPEKVDTMI IQAIGLLDDL DKELNTYAMR VREWYGWHFP ELTKIVADNI
201: HYAKAVKMMG NRVNAVNLDF SEILPEEVEA ELKEAAVISM GTEVNELDLS NIRELCDQVL ALSEYRAQLY DYLKSRMNTI APNLTALVGE LVGARLIAHG
301: GSLMNLAKQP GSTIQILGAE KALFRALKTK HATPKYGLIY HASLIGQAAP KHKGKISRSL AAKSALAIRY DALADGDDNS MGLESRIKLE TRLRVLEGKD
401: LGRSAGSTKG KPKIEAYEKD RKGGGALITP AKTYNPAADL VVGQTTEETP KKEVASKKRK HQEEEPTAEA AEKDGEQEKE KSKKKKKKSK DTEETPAADA
501: DASEKKKKKH ADEMECHIRT SSDEPYNSKL ASVIRLHLLC

Best Arabidopsis Sequence Match ( AT3G05060.1 )
(BLAST)

001: MVLVLYETAA GFALFKVKDE GKMANVEDLC KEFDTPDSAR KMVKLKAFEK FDNTSEALEA VAKLLEGAPS KGLRKFLKAN CQGETLAVAD SKLGNVIKEK
101: LKIDCIHNNA VMELLRGVRS QFTELISGLG DQDLAPMSLG LSHSLARYKL KFSSDKVDTM IIQAIGLLDD LDKELNTYAM RVREWYGWHF PELAKIISDN
201: ILYAKSVKLM GNRVNAAKLD FSEILADEIE ADLKDAAVIS MGTEVSDLDL LHIRELCDQV LSLSEYRAQL YDYLKSRMNT IAPNLTALVG ELVGARLISH
301: GGSLLNLSKQ PGSTVQILGA EKALFRALKT KHATPKYGLI FHASLVGQAA PKHKGKISRS LAAKTVLAIR VDALGDSQDN TMGLENRAKL EARLRNLEGK
401: DLGRLSGSSK GKPKIEVYNK DKKMGSGGLI TPAKTYNTAA DSLLGETSAK SEEPSKKKDK KKKKKVEEEK PEEEEPSEKK KKKKAEAETE AVVEVAKEEK
501: KKNKKKRKHE EEETTETPAK KKDKKEKKKK SKD

Arabidopsis Description

NOP5-2Probable nucleolar protein 5-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.