CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52494	Canola	nucleus	94.29	93.22
CDY19706	Canola	nucleus	87.81	86.17
CDY00004	Canola	nucleus	87.62	85.82
CDX80674	Canola	cytosol	87.43	85.63
CDX86179	Canola	nucleus	86.86	84.92
AT5G27120.1	Thale cress	cytosol	85.14	83.86
Zm00001d034259_P001	Maize	cytosol	23.05	82.31
Zm00001d007484_P001	Maize	cytosol	48.95	74.93
Zm00001d038818_P001	Maize	cytosol	39.05	70.93
Zm00001d011996_P002	Maize	cytosol	41.14	69.9
Solyc05g055880.2.1	Tomato	nucleus	68.19	69.79
PGSC0003DMT400015638	Potato	cytosol	71.24	68.25
PGSC0003DMT400060016	Potato	cytosol	69.9	67.84
Solyc09g083080.2.1	Tomato	nucleus	71.24	67.75
VIT_14s0030g01270.t01	Wine grape	nucleus	73.33	67.19
KRH29399	Soybean	nucleus	70.1	66.79
KRH24415	Soybean	nucleus	70.48	66.55
HORVU4Hr1G041810.4	Barley	cytosol	68.0	65.75
TraesCS2A01G119400.1	Wheat	nucleus	70.1	65.71
TraesCS2D01G120400.1	Wheat	nucleus	69.71	65.36
TraesCS1B01G379200.1	Wheat	cytosol	69.52	65.18
HORVU2Hr1G020690.6	Barley	cytosol	66.67	64.81
Os03t0350300-01	Rice	nucleus	69.14	63.91
Zm00001d047481_P003	Maize	plastid	68.38	63.88
Os03t0350100-02	Rice	nucleus	68.95	63.73
Zm00001d029144_P004	Maize	cytosol	68.0	63.3
GSMUA_Achr11P...	Banana	cytosol	70.29	63.08
KXG39385	Sorghum	cytosol	68.19	62.92
GSMUA_Achr8P09940_001	Banana	cytosol	70.29	62.76
KXG34017	Sorghum	cytosol	67.81	62.68
AT5G27140.2	Thale cress	cytosol	53.71	62.67
TraesCS4A01G141500.1	Wheat	nucleus	68.57	62.28
TraesCS2B01G139100.1	Wheat	endoplasmic reticulum, plastid	69.71	60.3
CDX98286	Canola	cytosol	13.14	51.11
Zm00001d031027_P001	Maize	plastid	50.86	45.18
Zm00001d036776_P001	Maize	mitochondrion	51.24	43.74
CDY63487	Canola	nucleus	42.1	42.42
CDY59117	Canola	nucleus	41.52	42.33
CDY42406	Canola	nucleus	41.33	41.81
CDY57300	Canola	nucleus	40.0	41.58
CDX82572	Canola	nucleus	39.81	41.39
CDY10510	Canola	nucleus	40.38	41.33
CDY44398	Canola	cytosol	32.57	38.43
CDY04069	Canola	cytosol	32.19	37.89
CDY08398	Canola	cytosol	1.52	33.33
CDY52879	Canola	nucleus	19.05	30.96
CDY08399	Canola	endoplasmic reticulum, plasma membrane	9.33	27.68
CDY72546	Canola	nucleus	16.76	20.95
CDY04340	Canola	plasma membrane	17.33	19.16
CDY24519	Canola	nucleus	17.14	18.52
CDY54131	Canola	mitochondrion	17.14	18.22
CDY39628	Canola	nucleus	15.43	17.76
CDY36542	Canola	nucleus	13.52	16.95

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	MapMan:17.1.1.2.1.5.3	UniProt:A0A078ING1	EnsemblPlants:CDY50583
ProteinID:CDY50583	ProteinID:CDY50583.1	ncoils:Coil	EnsemblPlantsGene:GSBRNA2T00097033001	InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687
InterPro:IPR029012	InterPro:NOP5_N	InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf	PFAM:PF01798
PFAM:PF08156	PFscan:PS51358	PANTHER:PTHR10894	PANTHER:PTHR10894:SF1	SMART:SM00931	SUPFAM:SSF89124
UniParc:UPI0004EEB54A	SEG:seg	:	:	:	:

Description

BnaC02g39570DBnaC02g39570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ING1]

Coordinates

chrLK032924:+:66471..69112

Molecular Weight (calculated)

57954.2 Da

IEP (calculated)

9.972

GRAVY (calculated)

-0.513

Length

525 amino acids

Sequence
(BLAST)

001: MSLYRPLSYL YQWPALDLGN VFSSPESARK MVKLKAFDKF DNTSDALEAV AKLVEGTPSK GLRKFLKANC KGETLAVADS KLGNIIKEKL TIDCVHNNAV
101: MELLRGVRSQ LSELITGLGE QDLAPMSLGL SHSLARYKLK FSSDKVDTMI IQAIGLLDDL DKELNTYAMR VREWYGWHFP ELAKIISDNI LYAKSVKLMG
201: NRINAAKLDF SEILADEVEA ELKEASVISM GTEVSDLDLI HIRELCDQVL SLAEYRAQLY DYLKSRMNTI APNLTALVGE LVGARLISHG GSLLNLAKQP
301: GSTVQILGAE KALFRALKTK HNTPKYGLIF HASVVGQAGG KNKPRIARSL AAKAALSIRC DALGDAGDNS MGVENRLKLE ARLRSLEGKD LGRLAGSAKG
401: KPKIEVYNKD KKMGSGGLIA PAETYNTAAD SLLVQTTVSA ENGVKEKKDK KKKKKAEAEE EEEAKAEESS KKKKKKKAKT EVEPEVVEPA KKEKKKKKRK
501: HEEEETEEPA KKKEKKEKKK KKSEA

Best Arabidopsis Sequence Match ( AT1G56110.1 )
(BLAST)

001: MAMYVIYESS SGYGLFEVHG LDEIGQNTEA VRTSVSDLSR FGRVVQLTAF HPFESALDAL NQVNAVSEGV MTDELRSFLE LNLPKVKEGK KPKFSLGLAE
101: PKLGSHIFEA TKIPCQSNEF VLELLRGVRQ HFDRFIKDLK PGDLEKSQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYARVSKMI DDKSKLTEDH IPMLTEVLGD EDKAKEVIEA GKASMGSDLS PLDLINVQTF AQKVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARYLANKCS IASRIDCFAD GATTAFGEKL
401: REQVEERLEF YDKGVAPRKN VDVMKEVIEN LKQEEEGKEP VDASVKKSKK KKAKGEEEEE VVAMEEDKSE KKKKKEKRKM ETAEENEKSE KKKTKKSKAG
501: GEEETDDGHS TKKKKKKSKS AE

Arabidopsis Description

NOP56At1g56110/T6H22_9 [Source:UniProtKB/TrEMBL;Acc:Q9SGT7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.