Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY10510 | Canola | nucleus | 83.7 | 22.03 |
| CDY59117 | Canola | nucleus | 83.7 | 21.94 |
| CDY63487 | Canola | nucleus | 84.44 | 21.88 |
| CDY42406 | Canola | nucleus | 82.96 | 21.58 |
| AT1G56110.1 | Thale cress | nucleus | 82.96 | 21.46 |
| CDY57300 | Canola | nucleus | 80.0 | 21.39 |
| CDX82572 | Canola | nucleus | 77.78 | 20.79 |
| TraesCS2B01G147900.1 | Wheat | plastid | 67.41 | 19.65 |
| CDY44398 | Canola | cytosol | 63.7 | 19.33 |
| TraesCS2A01G125400.1 | Wheat | cytosol, plastid | 65.93 | 19.18 |
| CDY04069 | Canola | cytosol | 62.96 | 19.06 |
| TraesCS2D01G128500.1 | Wheat | plastid | 64.44 | 18.71 |
| GSMUA_AchrUn_... | Banana | nucleus | 77.04 | 18.64 |
| TraesCS2D01G128600.1 | Wheat | nucleus | 74.07 | 18.55 |
| TraesCS2A01G125500.1 | Wheat | nucleus | 74.07 | 18.55 |
| GSMUA_Achr5P08210_001 | Banana | nucleus | 76.3 | 18.53 |
| TraesCS2B01G148000.1 | Wheat | nucleus | 74.07 | 18.52 |
| HORVU2Hr1G022110.2 | Barley | plastid | 74.81 | 18.46 |
| TraesCS1A01G379300.1 | Wheat | nucleus | 74.81 | 18.43 |
| TraesCS1D01G386500.1 | Wheat | nucleus | 74.81 | 18.43 |
| TraesCS1B01G401000.1 | Wheat | nucleus | 74.81 | 18.4 |
| Zm00001d029174_P005 | Maize | nucleus | 73.33 | 18.03 |
| EER92268 | Sorghum | nucleus | 73.33 | 18.0 |
| HORVU1Hr1G083960.6 | Barley | nucleus | 74.81 | 17.94 |
| HORVU2Hr1G022140.3 | Barley | nucleus | 74.07 | 17.86 |
| Zm00001d047472_P002 | Maize | plastid | 74.07 | 17.57 |
| Os03t0352300-01 | Rice | nucleus | 71.85 | 17.57 |
| EER97682 | Sorghum | endoplasmic reticulum | 73.33 | 17.52 |
| HORVU2Hr1G022120.1 | Barley | mitochondrion | 64.44 | 17.03 |
| CDY08398 | Canola | cytosol | 2.96 | 16.67 |
| CDY52879 | Canola | nucleus | 36.3 | 15.17 |
| Os07t0661800-01 | Rice | nucleus | 31.85 | 13.74 |
| CDY50583 | Canola | cytosol, mitochondrion, nucleus, plastid | 51.11 | 13.14 |
| CDY52494 | Canola | nucleus | 51.11 | 12.99 |
| CDX80674 | Canola | cytosol | 48.15 | 12.13 |
| CDX86179 | Canola | nucleus | 48.15 | 12.1 |
| CDY19706 | Canola | nucleus | 47.41 | 11.96 |
| CDY00004 | Canola | nucleus | 47.41 | 11.94 |
| CDY72546 | Canola | nucleus | 26.67 | 8.57 |
| CDY24519 | Canola | nucleus | 27.41 | 7.61 |
| CDY04340 | Canola | plasma membrane | 25.93 | 7.37 |
| CDY54131 | Canola | mitochondrion | 26.67 | 7.29 |
| CDY36542 | Canola | nucleus | 17.78 | 5.73 |
| CDY39628 | Canola | nucleus | 19.26 | 5.7 |
| CDY08399 | Canola | endoplasmic reticulum, plasma membrane | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX98286 | EnsemblPlantsGene:GSBRNA2T00105818001 | Gene3D:1.10.246.90 | InterPro:IPR002687 | InterPro:Nop_dom | InterPro:Nop_dom_sf |
| PANTHER:PTHR10894 | PANTHER:PTHR10894:SF0 | PFAM:PF01798 | PFscan:PS51358 | ProteinID:CDX98286 | ProteinID:CDX98286.1 |
| SUPFAM:SSF89124 | UniParc:UPI0004EDF489 | MapMan:35.1 | : | : | : |
Description
BnaC06g16470D
Coordinates
chrLK031904:-:353746..354414
Molecular Weight (calculated)
14798.1 Da
IEP (calculated)
10.085
GRAVY (calculated)
-0.113
Length
135 amino acids
Sequence
(BLAST)
(BLAST)
001: MIDDNWEGAS MGQDLSPLDL INVQTFAQKV MDRKKLYDYL VSKMSDIAPN LAALIGEMVG ARLISHAGKL SFSFTLLHKA LKTRGNTPKY GLIFPSSFIG
101: QASAKNKGRI APYLANKCSI ASRIDCFAGK NQKLE
101: QASAKNKGRI APYLANKCSI ASRIDCFAGK NQKLE
001: MAMYVIYESS SGYGLFEVHG LDEIGQNTEA VRTSVSDLSR FGRVVQLTAF HPFESALDAL NQVNAVSEGV MTDELRSFLE LNLPKVKEGK KPKFSLGLAE
101: PKLGSHIFEA TKIPCQSNEF VLELLRGVRQ HFDRFIKDLK PGDLEKSQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYARVSKMI DDKSKLTEDH IPMLTEVLGD EDKAKEVIEA GKASMGSDLS PLDLINVQTF AQKVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARYLANKCS IASRIDCFAD GATTAFGEKL
401: REQVEERLEF YDKGVAPRKN VDVMKEVIEN LKQEEEGKEP VDASVKKSKK KKAKGEEEEE VVAMEEDKSE KKKKKEKRKM ETAEENEKSE KKKTKKSKAG
501: GEEETDDGHS TKKKKKKSKS AE
101: PKLGSHIFEA TKIPCQSNEF VLELLRGVRQ HFDRFIKDLK PGDLEKSQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYARVSKMI DDKSKLTEDH IPMLTEVLGD EDKAKEVIEA GKASMGSDLS PLDLINVQTF AQKVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARYLANKCS IASRIDCFAD GATTAFGEKL
401: REQVEERLEF YDKGVAPRKN VDVMKEVIEN LKQEEEGKEP VDASVKKSKK KKAKGEEEEE VVAMEEDKSE KKKKKEKRKM ETAEENEKSE KKKTKKSKAG
501: GEEETDDGHS TKKKKKKSKS AE
Arabidopsis Description
NOP56At1g56110/T6H22_9 [Source:UniProtKB/TrEMBL;Acc:Q9SGT7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.