CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026149.1-P	Field mustard	nucleus	98.81	85.54
CDY39628	Canola	nucleus	92.12	84.65
CDY72546	Canola	nucleus	62.05	61.9
CDY04340	Canola	plasma membrane	68.02	60.0
CDY24519	Canola	nucleus	67.54	58.23
KRG94405	Soybean	nucleus	67.3	58.02
CDY54131	Canola	mitochondrion	68.26	57.89
KRH07033	Soybean	nucleus	67.06	57.82
Os04t0555400-01	Rice	nucleus	65.39	56.61
OQU82106	Sorghum	nucleus	65.16	56.41
TraesCS1D01G383400.2	Wheat	nucleus	65.16	56.29
TraesCS1A01G376100.1	Wheat	nucleus	65.16	56.29
Zm00001d002716_P002	Maize	nucleus	65.16	56.29
Os07t0141600-01	Rice	nucleus	64.92	56.2
TraesCS2B01G046400.1	Wheat	nucleus	63.48	55.88
GSMUA_Achr3P06150_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	65.39	55.69
VIT_01s0026g00230.t01	Wine grape	cytosol	64.2	52.85
TraesCS1B01G396600.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	64.92	52.71
TraesCS2B01G267700.1	Wheat	cytosol	56.32	50.43
Os02t0730100-00	Rice	extracellular	17.18	48.98
KXG30826	Sorghum	nucleus	49.64	47.6
GSMUA_Achr9P14550_001	Banana	plasma membrane	49.16	47.14
CDX98286	Canola	cytosol	5.73	17.78
CDX80674	Canola	cytosol	18.85	14.74
CDX86179	Canola	nucleus	18.85	14.71
CDY52494	Canola	nucleus	18.14	14.31
CDY19706	Canola	nucleus	18.14	14.21
CDY00004	Canola	nucleus	18.14	14.18
CDY63487	Canola	nucleus	16.95	13.63
CDY50583	Canola	cytosol, mitochondrion, nucleus, plastid	16.95	13.52
CDY59117	Canola	nucleus	16.47	13.4
CDY42406	Canola	nucleus	16.23	13.1
CDY57300	Canola	nucleus	15.75	13.07
CDY10510	Canola	nucleus	15.99	13.06
CDX82572	Canola	nucleus	15.51	12.87
CDY44398	Canola	cytosol	13.13	12.36
CDY04069	Canola	cytosol	12.89	12.11
CDY52879	Canola	nucleus	9.07	11.76
CDY08399	Canola	endoplasmic reticulum, plasma membrane	1.67	3.95
CDY08398	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.246.90	MapMan:35.1	GO:A0A078HFH2	UniProt:A0A078HFH2	EnsemblPlants:CDY36542	ProteinID:CDY36542
ProteinID:CDY36542.1	GO:GO:0000244	GO:GO:0000398	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0046540	EnsemblPlantsGene:GSBRNA2T00062222001	InterPro:IPR002687	InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf
PFAM:PF01798	PFAM:PF09785	PFscan:PS51358	PANTHER:PTHR13904	PANTHER:PTHR13904:SF0	InterPro:Prp31
InterPro:Prp31_C	SMART:SM00931	SUPFAM:SSF89124	UniParc:UPI0004EED641	SEG:seg	:

Description

BnaA06g09950DBnaA06g09950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HFH2]

Coordinates

chrLK032378:+:88781..90235

Molecular Weight (calculated)

45988.1 Da

IEP (calculated)

8.085

GRAVY (calculated)

-0.415

Length

419 amino acids

Sequence
(BLAST)

001: MAELEDSFLA EIDELSDYEE SGFEDNVANY GEDISMDMSD LETLKSDDDL DTVSKLLRTQ RYADVMNKVE DALGKDSCGA LSEDDPLYKL IVDCNKLTVD
101: IENEIVTVHG FIRSKYRPRF PELESLVHHA IEYASVPLPE DVLQKTLEAC DRAFELDSAL KKILAFVETK MGCIAPNLSA VVGSAKRKNL DGFSAVTTQS
201: RVGYLEQTEI FQKTPPGFRK QAIKLLAGKS TLAARVDACR GDPLGTNGKA LREEIQKKID KLQEPGVARQ PKPLPVPDMT AKKKRGGRRL RKMKERYAVT
301: EMRKLSNRVA FGVASEESSL GDGLGVGYGM LGQGGSKRLR VSSVPSKLKL GAKLEKKLKE RQYTSGVTTA TTSGFMTSRL AFTPVQGIEL CNPGAVKLGS
401: GTQSTYFSES GTFSQIKKI

Best Arabidopsis Sequence Match ( AT1G60170.1 )
(BLAST)

001: MATLEDSFLA DLDELSDNEA ELDENDGDVG KEEEDVDMDM ADLETLNYDD LDNVSKLQKS QRYADIMHKV EEALGKDSDG AEKGTVLEDD PEYKLIVDCN
101: QLSVDIENEI VIVHNFIKDK YKLKFQELES LVHHPIDYAC VVKKIGNETD LALVDLADLL PSAIIMVVSV TALTTKGSAL PEDVLQKVLE ACDRALDLDS
201: ARKKVLEFVE SKMGSIAPNL SAIVGSAVAA KLMGTAGGLS ALAKMPACNV QVLGHKRKNL AGFSSATSQS RVGYLEQTEI YQSTPPGLQA RAGRLVAAKS
301: TLAARVDATR GDPLGISGKA FREEIRKKIE KWQEPPPARQ PKPLPVPDSE PKKRRGGRRL RKMKERYQVT DMRKLANRMA FGTPEESSLG DGLGEGYGML
401: GQAGSNRLRV SSVPSKLKIN AKVAKKLKER QYAGGATTSG LTSSLAFTPV QGIELCNPQQ ALGLGSGTQS TYFSESGTFS KLKKI

Arabidopsis Description

PRP31Emb1220 [Source:UniProtKB/TrEMBL;Acc:A0A178WCJ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.