CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002716_P002	Maize	nucleus	97.11	96.91
Os04t0555400-01	Rice	nucleus	92.98	92.98
Os07t0141600-01	Rice	nucleus	92.15	92.15
TraesCS2B01G046400.1	Wheat	nucleus	88.22	89.71
TraesCS1D01G383400.2	Wheat	nucleus	89.88	89.69
TraesCS1A01G376100.1	Wheat	nucleus	89.88	89.69
Solyc08g078430.2.1	Tomato	nucleus	85.33	85.51
PGSC0003DMT400012169	Potato	nucleus	85.33	85.51
GSMUA_Achr3P06150_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	86.16	84.76
TraesCS1B01G396600.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	90.08	84.5
KRG94405	Soybean	nucleus	84.71	84.36
KRH07033	Soybean	nucleus	84.71	84.36
TraesCS2B01G267700.1	Wheat	cytosol	80.79	83.55
VIT_01s0026g00230.t01	Wine grape	cytosol	83.68	79.57
CDY72546	Canola	nucleus	68.18	78.57
Bra031522.1-P	Field mustard	nucleus	77.07	76.75
AT1G60170.1	Thale cress	nucleus	75.41	75.26
KXG30826	Sorghum	nucleus	67.56	74.83
CDY04340	Canola	plasma membrane	73.35	74.74
CDY24519	Canola	nucleus	73.97	73.66
CDY54131	Canola	mitochondrion	73.97	72.47
GSMUA_Achr9P14550_001	Banana	plasma membrane	64.46	71.4
Solyc07g064070.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	62.19	66.45
PGSC0003DMT400049589	Potato	cytosol, nucleus, plastid	63.02	66.3
PGSC0003DMT400000083	Potato	cytosol, nucleus, plasma membrane	62.19	66.01
CDY39628	Canola	nucleus	61.78	65.57
CDY36542	Canola	nucleus	56.41	65.16
Bra026149.1-P	Field mustard	nucleus	64.26	64.26
AT1G70400.3	Thale cress	cytosol	28.93	51.09
KXG39385	Sorghum	cytosol	19.42	16.52
KXG34017	Sorghum	cytosol	18.39	15.67
EER92268	Sorghum	nucleus	17.36	15.27
EER97682	Sorghum	endoplasmic reticulum	15.91	13.63

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	MapMan:16.4.1.3.3	EntrezGene:8055974	UniProt:C5YDJ9
ProteinID:EES11246.1	GO:GO:0000244	GO:GO:0000398	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005687	GO:GO:0005690	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0046540	GO:GO:0071011	GO:GO:0097526	InterPro:Helix_hairpin_bin_sf
InterPro:IPR002687	InterPro:IPR029012	InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf	EnsemblPlants:OQU82106
ProteinID:OQU82106	ProteinID:OQU82106.1	PFAM:PF01798	PFAM:PF09785	PFscan:PS51358	PANTHER:PTHR13904
PANTHER:PTHR13904:SF0	InterPro:Prp31	InterPro:Prp31_C	SMART:SM00931	EnsemblPlantsGene:SORBI_3006G173100	SUPFAM:SSF89124
unigene:Sbi.15156	UniParc:UPI0001A87005	RefSeq:XP_002446918.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:+:52904982..52911522

Molecular Weight (calculated)

52767.0 Da

IEP (calculated)

5.666

GRAVY (calculated)

-0.418

Length

484 amino acids

Sequence
(BLAST)

001: MANLADSFLA DLDELSDNEG YPEEDNAEEV GREEEDDDMA DLESLNYDDL DSVSKLQKTQ RYHDIMQKVE VALQKGTDFS SQGFILEEDP EYQLIVDCNA
101: LSVDIENEII IIHNFIRDKY RLKFPELESL VHHPIDYARV VKKIGNEMDL TLVDLEGLLP SAIIMVVSVT ASTTSGKPLS EDNLEKTTEA CDRALTLDAA
201: KKKVLDFVES RMGYLAPNLS AIVGSAVASK LMGTAGGLGA LAKMPACNVQ LLGAKRKNLA GFSTASSQFR VGYLEQTEVF QSTPPALRTR ACRLIAAKST
301: LAARIDSIRG DPTGKAGRNL LEEIRKKIEK WQEPPPAKLP KPLPVPDSEP KKKRGGRRLR KMKERYAQTD MMKLANRMQF GIPEESSLGD GLGEGYGMLG
401: QAGSGKLRVS AGQSKLAAKV AKKFKEKSYG SSGATSGLTS SLAFTPVQGI ELSNPQAQGN LLGGGTQSTY FSETGTFSKI RRTQ

Best Arabidopsis Sequence Match ( AT1G60170.1 )
(BLAST)

001: MATLEDSFLA DLDELSDNEA ELDENDGDVG KEEEDVDMDM ADLETLNYDD LDNVSKLQKS QRYADIMHKV EEALGKDSDG AEKGTVLEDD PEYKLIVDCN
101: QLSVDIENEI VIVHNFIKDK YKLKFQELES LVHHPIDYAC VVKKIGNETD LALVDLADLL PSAIIMVVSV TALTTKGSAL PEDVLQKVLE ACDRALDLDS
201: ARKKVLEFVE SKMGSIAPNL SAIVGSAVAA KLMGTAGGLS ALAKMPACNV QVLGHKRKNL AGFSSATSQS RVGYLEQTEI YQSTPPGLQA RAGRLVAAKS
301: TLAARVDATR GDPLGISGKA FREEIRKKIE KWQEPPPARQ PKPLPVPDSE PKKRRGGRRL RKMKERYQVT DMRKLANRMA FGTPEESSLG DGLGEGYGML
401: GQAGSNRLRV SSVPSKLKIN AKVAKKLKER QYAGGATTSG LTSSLAFTPV QGIELCNPQQ ALGLGSGTQS TYFSESGTFS KLKKI

Arabidopsis Description

PRP31Emb1220 [Source:UniProtKB/TrEMBL;Acc:A0A178WCJ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.