CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72546	Canola	nucleus	84.36	97.62
Bra031522.1-P	Field mustard	nucleus	95.06	95.06
CDY04340	Canola	plasma membrane	92.39	94.53
CDY54131	Canola	mitochondrion	95.88	94.33
AT1G60170.1	Thale cress	nucleus	87.65	87.84
KRH07033	Soybean	nucleus	76.75	76.75
KRG94405	Soybean	nucleus	76.54	76.54
GSMUA_Achr3P06150_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	75.1	74.19
OQU82106	Sorghum	nucleus	73.66	73.97
Zm00001d002716_P002	Maize	nucleus	73.46	73.61
Os07t0141600-01	Rice	nucleus	73.05	73.35
Os04t0555400-01	Rice	nucleus	73.05	73.35
TraesCS1A01G376100.1	Wheat	nucleus	72.43	72.58
TraesCS1D01G383400.2	Wheat	nucleus	72.43	72.58
TraesCS2B01G046400.1	Wheat	nucleus	70.78	72.27
VIT_01s0026g00230.t01	Wine grape	cytosol	72.84	69.55
TraesCS1B01G396600.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	72.22	68.02
CDY36542	Canola	nucleus	58.23	67.54
CDY39628	Canola	nucleus	62.96	67.11
TraesCS2B01G267700.1	Wheat	cytosol	62.35	64.74
GSMUA_Achr9P14550_001	Banana	plasma membrane	56.38	62.7
KXG30826	Sorghum	nucleus	54.32	60.41
Os02t0730100-00	Rice	extracellular	15.23	50.34
CDX98286	Canola	cytosol	7.61	27.41
CDX86179	Canola	nucleus	20.37	18.44
CDX80674	Canola	cytosol	20.16	18.28
CDY10510	Canola	nucleus	19.14	18.13
CDY63487	Canola	nucleus	19.34	18.04
CDY42406	Canola	nucleus	19.14	17.92
CDY52494	Canola	nucleus	19.55	17.89
CDY59117	Canola	nucleus	18.93	17.86
CDY57300	Canola	nucleus	18.31	17.62
CDY19706	Canola	nucleus	19.34	17.57
CDY00004	Canola	nucleus	19.34	17.54
CDX82572	Canola	nucleus	17.9	17.23
CDY50583	Canola	cytosol, mitochondrion, nucleus, plastid	18.52	17.14
CDY44398	Canola	cytosol	15.23	16.63
CDY04069	Canola	cytosol	15.02	16.37
CDY52879	Canola	nucleus	9.47	14.24
CDY08398	Canola	cytosol	0.62	12.5
CDY08399	Canola	endoplasmic reticulum, plasma membrane	2.26	6.21

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	MapMan:16.4.1.3.3	GO:A0A078GGW1	UniProt:A0A078GGW1
EnsemblPlants:CDY24519	ProteinID:CDY24519	ProteinID:CDY24519.1	GO:GO:0000244	GO:GO:0000398	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0046540	EnsemblPlantsGene:GSBRNA2T00026827001	InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687
InterPro:IPR029012	InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf	PFAM:PF01798	PFAM:PF09785
PFscan:PS51358	PANTHER:PTHR13904	PANTHER:PTHR13904:SF0	InterPro:Prp31	InterPro:Prp31_C	SMART:SM00931
SUPFAM:SSF89124	UniParc:UPI0004EF0162	SEG:seg	:	:	:

Description

BnaA01g22230DBnaA01g22230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GGW1]

Coordinates

chrLK032160:+:302964..307954

Molecular Weight (calculated)

53040.5 Da

IEP (calculated)

5.490

GRAVY (calculated)

-0.397

Length

486 amino acids

Sequence
(BLAST)

001: MRSAYGRMKK MSDMAAFSFR VEDMATLEDS FLADLDDLSD NEAELDASDG DDAKKDEEDI DMDMADLETL NYDDLDSVSK LQKSQRYLDI MQKVEEALGK
101: ESDGTEKGTV LEDDPEYKLI VDCNQLSVDI ENEIAIVHNF IRDKYRLKFQ ELESLVNHPI DYARVVKKIG NETDLTLVDL EGLLPSAIIM VVSVTALTTK
201: GSPLPEDVLQ KTLEACDRAL DLDSARKKVL DFVESKMGSI APNLSAIVGS AVAAKLMGTA GGLSALAKMP ACNVQVLGHK RKNLAGFSSA TSQLRVGYLE
301: QTEIFQSTPP ALKSRAGRIL AAKSTLAARI EKWQEPPPAR QPKPLPVPDS EPKKRRGGRR LRKMKERYAV TDMRKLANRM AFGTPEESSL GDGLGEGYGM
401: LGQAGSNRLR ISSVPSKLKI NPTIAKKLKE RNYAGGATTS GLTSSLAFTP VQGIELCNPQ QALGLGSGTQ STYFSESGTF SKLKKI

Best Arabidopsis Sequence Match ( AT1G60170.1 )
(BLAST)

001: MATLEDSFLA DLDELSDNEA ELDENDGDVG KEEEDVDMDM ADLETLNYDD LDNVSKLQKS QRYADIMHKV EEALGKDSDG AEKGTVLEDD PEYKLIVDCN
101: QLSVDIENEI VIVHNFIKDK YKLKFQELES LVHHPIDYAC VVKKIGNETD LALVDLADLL PSAIIMVVSV TALTTKGSAL PEDVLQKVLE ACDRALDLDS
201: ARKKVLEFVE SKMGSIAPNL SAIVGSAVAA KLMGTAGGLS ALAKMPACNV QVLGHKRKNL AGFSSATSQS RVGYLEQTEI YQSTPPGLQA RAGRLVAAKS
301: TLAARVDATR GDPLGISGKA FREEIRKKIE KWQEPPPARQ PKPLPVPDSE PKKRRGGRRL RKMKERYQVT DMRKLANRMA FGTPEESSLG DGLGEGYGML
401: GQAGSNRLRV SSVPSKLKIN AKVAKKLKER QYAGGATTSG LTSSLAFTPV QGIELCNPQQ ALGLGSGTQS TYFSESGTFS KLKKI

Arabidopsis Description

PRP31Emb1220 [Source:UniProtKB/TrEMBL;Acc:A0A178WCJ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.