CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020601.1-P	Field mustard	nucleus	90.58	98.57
CDY50583	Canola	cytosol, mitochondrion, nucleus, plastid	93.22	94.29
CDY19706	Canola	nucleus	90.77	90.09
CDY00004	Canola	nucleus	90.58	89.74
CDX80674	Canola	cytosol	90.4	89.55
CDX86179	Canola	nucleus	90.02	89.01
AT5G27120.1	Thale cress	cytosol	87.95	87.62
Zm00001d034259_P001	Maize	cytosol	22.41	80.95
Zm00001d038818_P001	Maize	cytosol	41.24	75.78
Zm00001d007484_P001	Maize	cytosol	47.65	73.76
Solyc05g055880.2.1	Tomato	nucleus	71.19	73.68
PGSC0003DMT400015638	Potato	cytosol	73.82	71.53
PGSC0003DMT400060016	Potato	cytosol	72.69	71.35
KRH29399	Soybean	nucleus	73.26	70.6
VIT_14s0030g01270.t01	Wine grape	nucleus	76.08	70.51
Solyc09g083080.2.1	Tomato	nucleus	73.26	70.47
KRH24415	Soybean	nucleus	73.63	70.32
Zm00001d011996_P002	Maize	cytosol	40.68	69.9
TraesCS2A01G119400.1	Wheat	nucleus	71.94	68.21
HORVU4Hr1G041810.4	Barley	cytosol	69.68	68.14
TraesCS2D01G120400.1	Wheat	nucleus	71.56	67.86
AT5G27140.2	Thale cress	cytosol	57.44	67.78
TraesCS1B01G379200.1	Wheat	cytosol	71.37	67.68
HORVU2Hr1G020690.6	Barley	cytosol	68.55	67.41
Os03t0350300-01	Rice	nucleus	71.0	66.37
Os03t0350100-02	Rice	nucleus	70.62	66.02
Zm00001d047481_P003	Maize	plastid	69.87	66.01
Zm00001d029144_P004	Maize	cytosol	69.68	65.6
KXG39385	Sorghum	cytosol	69.87	65.2
GSMUA_Achr11P...	Banana	cytosol	71.75	65.13
GSMUA_Achr8P09940_001	Banana	cytosol	71.75	64.8
KXG34017	Sorghum	cytosol	69.11	64.61
TraesCS4A01G141500.1	Wheat	nucleus	70.06	64.36
TraesCS2B01G139100.1	Wheat	endoplasmic reticulum, plastid	71.56	62.6
CDX98286	Canola	cytosol	12.99	51.11
Zm00001d031027_P001	Maize	plastid	52.35	47.04
Zm00001d036776_P001	Maize	mitochondrion	51.6	44.55
CDY59117	Canola	nucleus	41.81	43.11
CDY63487	Canola	nucleus	42.18	42.99
CDY42406	Canola	nucleus	41.62	42.58
CDY57300	Canola	nucleus	40.3	42.38
CDX82572	Canola	nucleus	40.11	42.18
CDY10510	Canola	nucleus	40.68	42.11
CDY44398	Canola	cytosol	33.33	39.78
CDY04069	Canola	cytosol	32.96	39.24
CDY08398	Canola	cytosol	1.51	33.33
CDY52879	Canola	nucleus	18.27	30.03
CDY08399	Canola	endoplasmic reticulum, plasma membrane	9.6	28.81
CDY72546	Canola	nucleus	16.38	20.71
CDY04340	Canola	plasma membrane	17.51	19.58
CDY24519	Canola	nucleus	17.89	19.55
CDY54131	Canola	mitochondrion	17.89	19.23
CDY39628	Canola	nucleus	16.2	18.86
CDY36542	Canola	nucleus	14.31	18.14

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	MapMan:17.1.1.2.1.5.3	UniProt:A0A078ISR9	EnsemblPlants:CDY52494
ProteinID:CDY52494	ProteinID:CDY52494.1	ncoils:Coil	EnsemblPlantsGene:GSBRNA2T00007170001	InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687
InterPro:IPR029012	InterPro:NOP5_N	InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf	PFAM:PF01798
PFAM:PF08156	PFscan:PS51358	PANTHER:PTHR10894	PANTHER:PTHR10894:SF1	SMART:SM00931	SUPFAM:SSF89124
UniParc:UPI0004EED0C7	SEG:seg	:	:	:	:

Description

BnaAnng11410DBnaAnng11410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ISR9]

Coordinates

chrLK033097:-:1592..4394

Molecular Weight (calculated)

58558.9 Da

IEP (calculated)

9.926

GRAVY (calculated)

-0.506

Length

531 amino acids

Sequence
(BLAST)

001: MLLLFETPGG FAIFKVLDEG KLSNVEDLGN VFSSAESARK MVKLKAFDKF DNTSEALEAV AKLVEGTPSK GLRKFLKANC KDETLAVADS KLGNIIKEKL
101: TIDCVHNNAV MELLRGVRSQ LSELISGLGE QDLAPMSLGL SHSLARYKLK FSSDKVDTMI IQAIGLLDDL DKELNTYAMR VREWYGWHFP ELAKIISDNI
201: LYAKSVKLMG NRINAAKLDF SEILADEVEA ELKEASVISM GTEVSDLDLI HIRELCDQVL SLAEYRAQLY DYLKSRMNTI APNLTALVGE LVGARLISHS
301: GSLLNLSKQP GSTVQILGAE KALFRALKTK HNTPKYGLIF HASVVGQAGG KNKPRIARSL AAKAALSIRF DALGDAGDNS MGVENRLKLE ARLRSLEGKD
401: LGRLAGSAKG KPKIEVYNKD KKMGSGGLIA PAKTYNTAAD SLLVSAENGV KEKKDKKKKK KAEAEEEEEA KSEESSKKKK KKAKTEVEPE VEEPAKKEKK
501: KKKKRKHEEE ETEEPAKKKE KKEKKKKKSE A

Best Arabidopsis Sequence Match ( AT5G27120.1 )
(BLAST)

001: MLILFETPGG FAIFKVLNEG KLSNVEDLGN EFSTAKLARK MVKLVAFDKF DNTAEALEAV AKLLEGTPSK GLRKFLKANC VGETLAVADS KLGNIIKEKL
101: KIVCVHNNAV MELLRGIRSQ LTELISGLGD QDLGPMSLGL SHSLARYKLK FSSDKVDTMI IQAIGLLDDL DKELNTYAMR VREWFGWHFP ELAKIVQDNI
201: LYAKAVKLMG NRINAAKLDF SEILADEIEA ELKEAAVISM GTEVSDLDLL HIRELCDQVL SLAEYRAQLY DYLKSRMNTI APNLTALVGE LVGARLISHG
301: GSLLNLAKQP GSTVQILGAE KALFRALKTK HATPKYGLIF HASVVGQAAP KNKGKISRSL AAKSVLAIRC DALGDSQDNT MGVENRLKLE ARLRTLEGKD
401: LGRLSGSAKG KPKIEVYDKD KKKGSGGLIT PAKTYNTAAD SLLQTPTVDS ENGVKEKKDK KKKKKADDEE EAKTEEPSKK KSNKKKTEAE PETAEEPAKK
501: EKKKKRKHEE EETEMPAKKK EKSEKKKKKK TEV

Arabidopsis Description

NOP5-1Probable nucleolar protein 5-1 [Source:UniProtKB/Swiss-Prot;Acc:O04658]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.