Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d034259_P001 | Maize | cytosol | 41.11 | 95.92 |
| Zm00001d038818_P001 | Maize | cytosol | 65.31 | 77.51 |
| Zm00001d011996_P002 | Maize | cytosol | 66.18 | 73.46 |
| Zm00001d047481_P003 | Maize | plastid | 93.59 | 57.12 |
| Zm00001d029144_P004 | Maize | cytosol | 92.13 | 56.03 |
| KXG39385 | Sorghum | cytosol | 91.84 | 55.36 |
| HORVU4Hr1G041810.4 | Barley | cytosol | 86.3 | 54.51 |
| Os03t0350100-02 | Rice | nucleus | 88.05 | 53.17 |
| Os03t0350300-01 | Rice | nucleus | 87.76 | 52.99 |
| TraesCS2D01G120400.1 | Wheat | nucleus | 84.84 | 51.96 |
| Solyc05g055880.2.1 | Tomato | nucleus | 77.55 | 51.85 |
| TraesCS1B01G379200.1 | Wheat | cytosol | 84.26 | 51.61 |
| TraesCS4A01G141500.1 | Wheat | nucleus | 86.59 | 51.38 |
| CDY19706 | Canola | nucleus | 77.84 | 49.91 |
| CDY00004 | Canola | nucleus | 77.84 | 49.81 |
| Bra036111.1-P | Field mustard | nucleus | 77.55 | 49.63 |
| PGSC0003DMT400015638 | Potato | cytosol | 79.01 | 49.45 |
| CDX80674 | Canola | cytosol | 77.26 | 49.44 |
| Zm00001d031027_P001 | Maize | plastid | 85.13 | 49.41 |
| PGSC0003DMT400060016 | Potato | cytosol | 77.84 | 49.35 |
| Bra009978.1-P | Field mustard | nucleus | 77.26 | 49.35 |
| CDX86179 | Canola | nucleus | 77.26 | 49.35 |
| AT3G05060.1 | Thale cress | cytosol | 76.68 | 49.34 |
| AT5G27120.1 | Thale cress | cytosol | 76.38 | 49.16 |
| GSMUA_Achr11P... | Banana | cytosol | 83.67 | 49.06 |
| CDY50583 | Canola | cytosol, mitochondrion, nucleus, plastid | 74.93 | 48.95 |
| Solyc09g083080.2.1 | Tomato | nucleus | 78.72 | 48.91 |
| GSMUA_Achr8P09940_001 | Banana | cytosol | 83.67 | 48.81 |
| KRH29399 | Soybean | nucleus | 78.13 | 48.64 |
| VIT_14s0030g01270.t01 | Wine grape | nucleus | 81.05 | 48.52 |
| Zm00001d036776_P001 | Maize | mitochondrion | 86.88 | 48.46 |
| TraesCS2B01G139100.1 | Wheat | endoplasmic reticulum, plastid | 85.42 | 48.27 |
| KRH24415 | Soybean | nucleus | 78.13 | 48.2 |
| CDY52494 | Canola | nucleus | 73.76 | 47.65 |
| AT5G27140.2 | Thale cress | cytosol | 60.06 | 45.78 |
| Bra020601.1-P | Field mustard | nucleus | 64.43 | 45.29 |
| Zm00001d029174_P005 | Maize | nucleus | 46.36 | 28.96 |
| Zm00001d047472_P002 | Maize | plastid | 46.36 | 27.94 |
| Zm00001d002716_P002 | Maize | nucleus | 19.83 | 14.02 |
Protein Annotations
| EnsemblPlants:Zm00001d007484_P001 | EnsemblPlants:Zm00001d007484_T001 | EnsemblPlantsGene:Zm00001d007484 | Gene3D:1.10.150.460 | Gene3D:1.10.246.90 | Gene3D:1.10.287.660 |
| InterPro:Helix_hairpin_bin_sf | InterPro:IPR002687 | InterPro:IPR029012 | InterPro:NOSIC | InterPro:Nop_dom | InterPro:Nop_dom_sf |
| PANTHER:PTHR10894 | PANTHER:PTHR10894:SF1 | PFAM:PF01798 | PFscan:PS51358 | ProteinID:ONM26943.1 | SMART:SM00931 |
| SUPFAM:SSF89124 | UniParc:UPI0002210ABE | UniProt:A0A1D6F6Q7 | MapMan:17.1.1.2.1.5.3 | : | : |
Description
Probable nucleolar protein 5-1
Coordinates
chr2:+:232760300..232762194
Molecular Weight (calculated)
38175.8 Da
IEP (calculated)
8.774
GRAVY (calculated)
-0.058
Length
343 amino acids
Sequence
(BLAST)
(BLAST)
001: MIIDSKPSKG LRKFLQKHCE GETLAVADSK LGNAIKEKLK IDCLHNSAVM ELMRGLRNQL TELITGLGAQ DLGPMSLGLS HSLSRYKLKF SPEKVDTMII
101: QAIGLLDDLD KELNTYAMRV REWYGWHFPE LTKIVTDNIQ YAKVVKMMGN RVNAVNLDFS EILSDEELET QLKEAAVISM GTEVSDLDLS NIRELCDQVL
201: ALSEYRAQLY DYLRSRMNTI APNLTSLVGE LVGAGLIAHG GSLLNLAKQP GSTIQILGAE KALFRALKTK HSTPMYGLIY HASLIGKASQ KHKGKISRSL
301: AAKTALAIRY DALGDGEDKM CVIVVYWYYI FPLQRTGIQL VIR
101: QAIGLLDDLD KELNTYAMRV REWYGWHFPE LTKIVTDNIQ YAKVVKMMGN RVNAVNLDFS EILSDEELET QLKEAAVISM GTEVSDLDLS NIRELCDQVL
201: ALSEYRAQLY DYLRSRMNTI APNLTSLVGE LVGAGLIAHG GSLLNLAKQP GSTIQILGAE KALFRALKTK HSTPMYGLIY HASLIGKASQ KHKGKISRSL
301: AAKTALAIRY DALGDGEDKM CVIVVYWYYI FPLQRTGIQL VIR
001: MAMYVIYESS SGYGLFEVHG LDEIGQNTEA VRTSVSDLSR FGRVVQLTAF HPFESALDAL NQVNAVSEGV MTDELRSFLE LNLPKVKEGK KPKFSLGLAE
101: PKLGSHIFEA TKIPCQSNEF VLELLRGVRQ HFDRFIKDLK PGDLEKSQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYARVSKMI DDKSKLTEDH IPMLTEVLGD EDKAKEVIEA GKASMGSDLS PLDLINVQTF AQKVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARYLANKCS IASRIDCFAD GATTAFGEKL
401: REQVEERLEF YDKGVAPRKN VDVMKEVIEN LKQEEEGKEP VDASVKKSKK KKAKGEEEEE VVAMEEDKSE KKKKKEKRKM ETAEENEKSE KKKTKKSKAG
501: GEEETDDGHS TKKKKKKSKS AE
101: PKLGSHIFEA TKIPCQSNEF VLELLRGVRQ HFDRFIKDLK PGDLEKSQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYARVSKMI DDKSKLTEDH IPMLTEVLGD EDKAKEVIEA GKASMGSDLS PLDLINVQTF AQKVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARYLANKCS IASRIDCFAD GATTAFGEKL
401: REQVEERLEF YDKGVAPRKN VDVMKEVIEN LKQEEEGKEP VDASVKKSKK KKAKGEEEEE VVAMEEDKSE KKKKKEKRKM ETAEENEKSE KKKTKKSKAG
501: GEEETDDGHS TKKKKKKSKS AE
Arabidopsis Description
NOP56At1g56110/T6H22_9 [Source:UniProtKB/TrEMBL;Acc:Q9SGT7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.