Factsheet for Zm00001d036776_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034259_P001	Maize	cytosol	23.09	96.6
Zm00001d031027_P001	Maize	plastid	92.2	95.94
Zm00001d038818_P001	Maize	cytosol	43.58	92.73
Zm00001d007484_P001	Maize	cytosol	48.46	86.88
Zm00001d011996_P002	Maize	cytosol	35.45	70.55
Zm00001d047481_P003	Maize	plastid	57.72	63.17
Zm00001d029144_P004	Maize	cytosol	57.4	62.59
KXG39385	Sorghum	cytosol	56.91	61.51
HORVU4Hr1G041810.4	Barley	cytosol	53.98	61.14
Solyc05g055880.2.1	Tomato	nucleus	49.76	59.65
Os03t0350300-01	Rice	nucleus	54.8	59.33
Os03t0350100-02	Rice	nucleus	54.8	59.33
TraesCS2D01G120400.1	Wheat	nucleus	52.68	57.86
TraesCS1B01G379200.1	Wheat	cytosol	52.36	57.5
TraesCS4A01G141500.1	Wheat	nucleus	53.66	57.09
PGSC0003DMT400060016	Potato	cytosol	49.76	56.56
TraesCS2B01G139100.1	Wheat	endoplasmic reticulum, plastid	55.28	56.01
PGSC0003DMT400015638	Potato	cytosol	49.59	55.66
Solyc09g083080.2.1	Tomato	nucleus	49.76	55.43
GSMUA_Achr11P...	Banana	cytosol	52.36	55.04
VIT_14s0030g01270.t01	Wine grape	nucleus	50.73	54.45
GSMUA_Achr8P09940_001	Banana	cytosol	52.03	54.42
KRH29399	Soybean	nucleus	48.62	54.27
KRH24415	Soybean	nucleus	48.78	53.96
AT3G05060.1	Thale cress	cytosol	46.67	53.85
CDY19706	Canola	nucleus	46.5	53.46
CDX80674	Canola	cytosol	46.5	53.36
CDY00004	Canola	nucleus	46.5	53.36
Bra036111.1-P	Field mustard	nucleus	46.34	53.17
CDX86179	Canola	nucleus	46.34	53.07
Bra009978.1-P	Field mustard	nucleus	46.34	53.07
AT5G27120.1	Thale cress	cytosol	45.85	52.91
CDY52494	Canola	nucleus	44.55	51.6
CDY50583	Canola	cytosol, mitochondrion, nucleus, plastid	43.74	51.24
Bra020601.1-P	Field mustard	nucleus	39.35	49.59
AT5G27140.2	Thale cress	cytosol	35.61	48.67
Zm00001d029174_P005	Maize	nucleus	27.64	30.97
Zm00001d047472_P002	Maize	plastid	27.64	29.88
Zm00001d002716_P002	Maize	nucleus	12.03	15.26

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	MapMan:17.1.1.2.1.5.3	Gene3D:3.40.50.1440	UniProt:A0A1D6LR32
ProteinID:AQK81919.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0016787	InterPro:Helix_hairpin_bin_sf
InterPro:IPR002687	InterPro:IPR029012	InterPro:IPR036525	InterPro:NOP5_N	InterPro:NOSIC	InterPro:Nop_dom
InterPro:Nop_dom_sf	PFAM:PF01798	PFAM:PF08156	PFscan:PS51358	PANTHER:PTHR10894	PANTHER:PTHR10894:SF1
SMART:SM00931	SUPFAM:SSF89124	InterPro:Tubulin/FtsZ_GTPase_sf	UniParc:UPI000843AECC	EnsemblPlantsGene:Zm00001d036776	EnsemblPlants:Zm00001d036776_P001
EnsemblPlants:Zm00001d036776_T001	SEG:seg	:	:	:	:

Description

Probable nucleolar protein 5-1

Coordinates

chr6:+:100476744..100483844

Molecular Weight (calculated)

68416.9 Da

IEP (calculated)

7.251

GRAVY (calculated)

-0.288

Length

615 amino acids

Sequence
(BLAST)

001: MDSVRSGPFG QIFCPDNFVF QSGAGNNWAK GHYTEGAGNN RNRTRHPRPS TTYLHPLSAS DVGAPTGNRQ VSLWGSSTKE ITRDTLLQKV SEENQLHRHL
101: CRAAAAALSI QVIFTNDCYV FALCPFAGPQ FQMNLKDEET TVETDSTQAP ISQVLYTFHS VHHSMPKLEY SSSKMDMEKE IRKQVDDAIA KAKLDEASRA
201: LLMKVLEDAT QDVVQRQAKL NARALQRGYI IPVYYDNLST DESSPAELIG DWSCAEMLVL FETPARFTLF KVLDKVEDLW KEFTTSDSAR KVVELKAFNK
301: FENTSDALSA ATLIIDSKPS KGLRKFLQKH CEGETLAVAD SKLGNAIKEK LLMRGLRNQL TELITGLGAQ DLGPMSLGLS HSLSRYKLKF SPEKVDTMII
401: QDIGLLDDLD KELNTYAMRV REWYGWHFPE LTKIVTDNIQ YAKVVKMMGN RVNAVNLDFS EILSDEELET QLKEAAVISM GTEVSDLDLS NIRELCDQVL
501: ALSEYRAQLY DYLRSRMNTI APNLTALVGE LVGAHLIAHG GSLLNLAKQP GSTIQILGAE KALFRALKTK HSTPKYGLIY HASLIGKASQ KHKGKISRSL
601: AAKTALAIRY DALGD

Best Arabidopsis Sequence Match ( AT1G56110.1 )
(BLAST)

001: MAMYVIYESS SGYGLFEVHG LDEIGQNTEA VRTSVSDLSR FGRVVQLTAF HPFESALDAL NQVNAVSEGV MTDELRSFLE LNLPKVKEGK KPKFSLGLAE
101: PKLGSHIFEA TKIPCQSNEF VLELLRGVRQ HFDRFIKDLK PGDLEKSQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYARVSKMI DDKSKLTEDH IPMLTEVLGD EDKAKEVIEA GKASMGSDLS PLDLINVQTF AQKVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARYLANKCS IASRIDCFAD GATTAFGEKL
401: REQVEERLEF YDKGVAPRKN VDVMKEVIEN LKQEEEGKEP VDASVKKSKK KKAKGEEEEE VVAMEEDKSE KKKKKEKRKM ETAEENEKSE KKKTKKSKAG
501: GEEETDDGHS TKKKKKKSKS AE

Arabidopsis Description

NOP56At1g56110/T6H22_9 [Source:UniProtKB/TrEMBL;Acc:Q9SGT7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.