Factsheet for PGSC0003DMT400060016

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, nucleus, plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g055880.2.1	Tomato	nucleus	90.94	95.91
PGSC0003DMT400015638	Potato	cytosol	86.14	85.04
Zm00001d038818_P001	Maize	cytosol	45.1	84.43
Zm00001d034259_P001	Maize	cytosol	22.18	81.63
Zm00001d007484_P001	Maize	cytosol	49.35	77.84
VIT_14s0030g01270.t01	Wine grape	nucleus	82.07	77.49
CDX80674	Canola	cytosol	75.05	75.75
KRH29399	Soybean	nucleus	76.34	74.95
TraesCS2D01G120400.1	Wheat	nucleus	77.45	74.82
CDY00004	Canola	nucleus	73.94	74.63
CDY19706	Canola	nucleus	73.75	74.58
Bra009978.1-P	Field mustard	nucleus	73.94	74.49
CDX86179	Canola	nucleus	73.94	74.49
AT3G05060.1	Thale cress	cytosol	73.38	74.48
TraesCS2A01G119400.1	Wheat	nucleus	77.08	74.46
AT5G27120.1	Thale cress	cytosol	73.2	74.3
Bra036111.1-P	Field mustard	nucleus	73.57	74.25
KRH24415	Soybean	nucleus	76.16	74.1
Zm00001d011996_P002	Maize	cytosol	42.14	73.79
TraesCS1B01G379200.1	Wheat	cytosol	76.34	73.75
HORVU2Hr1G020690.6	Barley	cytosol	73.2	73.33
HORVU4Hr1G041810.4	Barley	cytosol	73.57	73.3
GSMUA_Achr11P...	Banana	cytosol	78.93	72.99
Os03t0350100-02	Rice	nucleus	76.53	72.89
CDY52494	Canola	nucleus	71.35	72.69
GSMUA_Achr8P09940_001	Banana	cytosol	78.74	72.45
Os03t0350300-01	Rice	nucleus	75.97	72.36
Bra020601.1-P	Field mustard	nucleus	64.33	71.31
KXG39385	Sorghum	cytosol	74.86	71.18
Zm00001d047481_P003	Maize	plastid	73.94	71.17
Zm00001d029144_P004	Maize	cytosol	73.75	70.74
KXG34017	Sorghum	cytosol	74.12	70.6
CDY50583	Canola	cytosol, mitochondrion, nucleus, plastid	67.84	69.9
TraesCS4A01G141500.1	Wheat	nucleus	74.31	69.55
TraesCS2B01G139100.1	Wheat	endoplasmic reticulum, plastid	76.16	67.87
AT5G27140.2	Thale cress	cytosol	52.68	63.33
Zm00001d031027_P001	Maize	plastid	57.67	52.79
Zm00001d036776_P001	Maize	mitochondrion	56.56	49.76
PGSC0003DMT400007150	Potato	nucleus	41.04	40.14
PGSC0003DMT400000083	Potato	cytosol, nucleus, plasma membrane	17.19	20.39
PGSC0003DMT400012169	Potato	nucleus	16.82	18.84
PGSC0003DMT400049589	Potato	cytosol, nucleus, plastid	15.34	18.04

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	EntrezGene:102591435	MapMan:17.1.1.2.1.5.3	InterPro:Helix_hairpin_bin_sf
InterPro:IPR002687	InterPro:IPR029012	UniProt:M1C533	InterPro:NOP5_N	InterPro:NOSIC	InterPro:Nop_dom
InterPro:Nop_dom_sf	PFAM:PF01798	PFAM:PF08156	EnsemblPlantsGene:PGSC0003DMG400023353	PGSC:PGSC0003DMG400023353	EnsemblPlants:PGSC0003DMT400060016
PFscan:PS51358	PANTHER:PTHR10894	PANTHER:PTHR10894:SF1	SMART:SM00931	SUPFAM:SSF89124	UniParc:UPI00029564F4
RefSeq:XP_006345813.1	RefSeq:XP_015163543.1	SEG:seg	:	:	:

Description

MAR-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400023353]

Coordinates

chr5:-:51455370..51461486

Molecular Weight (calculated)

59612.9 Da

IEP (calculated)

9.452

GRAVY (calculated)

-0.500

Length

541 amino acids

Sequence
(BLAST)

001: MLVLFETPAG FALFKVLDEG KLSKVEDLSK EFTTSDSARK VVKLKAFSKF ENTSEALSAA TLLIDSKPSK GLRKFLKAHC DGETLGVADS KLGNAIKEKL
101: QIECVHNNVV MELMRGLRSQ LTELISGLAT QDLAPMSLGL SHSLSRYKLK FSPDKVDTMI VQAIGLLDDL DKELNTYAMR VREWYGWHFP ELAKIVQDNI
201: LYAKAVKLMG DRVNAAKLDF SEILLEEVEA ELKEAAMISM GTEVSDLDLE NIKDLCSQVL SFSEYRAQLY DYLKSRMNTI APNLTALVGE LVGARLISHG
301: GSLMNLAKQP GSTVQILGAE KALFRALKTK HATPKYGLIY HASLIGQAAP KHKGKIARSL ASKASLAIRY DALGDGQDNT MGLENRVKLE VRLRALEGKE
401: LGKSAGSAKG KPKIEAYDKD RKKGAGALIT PAKVYNLSAD AVLGCTNNES VDEPPSQTEV YEEKKKKKKS AEAEDNGIVE SEETGMKKEK KKKKHAAADG
501: TEENGEVEKS KKKKRKHSDD DESETTDIKK EKKKKKKKTE E

Best Arabidopsis Sequence Match ( AT3G05060.1 )
(BLAST)

001: MVLVLYETAA GFALFKVKDE GKMANVEDLC KEFDTPDSAR KMVKLKAFEK FDNTSEALEA VAKLLEGAPS KGLRKFLKAN CQGETLAVAD SKLGNVIKEK
101: LKIDCIHNNA VMELLRGVRS QFTELISGLG DQDLAPMSLG LSHSLARYKL KFSSDKVDTM IIQAIGLLDD LDKELNTYAM RVREWYGWHF PELAKIISDN
201: ILYAKSVKLM GNRVNAAKLD FSEILADEIE ADLKDAAVIS MGTEVSDLDL LHIRELCDQV LSLSEYRAQL YDYLKSRMNT IAPNLTALVG ELVGARLISH
301: GGSLLNLSKQ PGSTVQILGA EKALFRALKT KHATPKYGLI FHASLVGQAA PKHKGKISRS LAAKTVLAIR VDALGDSQDN TMGLENRAKL EARLRNLEGK
401: DLGRLSGSSK GKPKIEVYNK DKKMGSGGLI TPAKTYNTAA DSLLGETSAK SEEPSKKKDK KKKKKVEEEK PEEEEPSEKK KKKKAEAETE AVVEVAKEEK
501: KKNKKKRKHE EEETTETPAK KKDKKEKKKK SKD

Arabidopsis Description

NOP5-2Probable nucleolar protein 5-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.