Factsheet for TraesCS4A01G141500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G041810.4	Barley	cytosol	88.06	93.74
Zm00001d038818_P001	Maize	cytosol	46.02	92.04
Zm00001d034259_P001	Maize	cytosol	22.66	89.12
Zm00001d007484_P001	Maize	cytosol	51.38	86.59
Os03t0350100-02	Rice	nucleus	84.95	86.44
Os03t0350300-01	Rice	nucleus	84.08	85.56
KXG39385	Sorghum	cytosol	83.56	84.89
Zm00001d047481_P003	Maize	plastid	82.18	84.52
KXG34017	Sorghum	cytosol	82.7	84.15
Zm00001d029144_P004	Maize	cytosol	82.01	84.04
TraesCS2A01G119400.1	Wheat	nucleus	80.97	83.57
Zm00001d011996_P002	Maize	cytosol	43.25	80.91
Solyc05g055880.2.1	Tomato	nucleus	68.34	77.0
PGSC0003DMT400060016	Potato	cytosol	69.55	74.31
GSMUA_Achr8P09940_001	Banana	cytosol	75.43	74.15
GSMUA_Achr11P...	Banana	cytosol	74.74	73.85
CDX80674	Canola	cytosol	67.65	72.95
PGSC0003DMT400015638	Potato	cytosol	69.03	72.81
CDY19706	Canola	nucleus	66.95	72.34
Solyc09g083080.2.1	Tomato	nucleus	69.03	72.28
Bra009978.1-P	Field mustard	nucleus	67.13	72.25
CDX86179	Canola	nucleus	67.13	72.25
VIT_14s0030g01270.t01	Wine grape	nucleus	71.45	72.08
KRH29399	Soybean	nucleus	68.69	72.05
CDY00004	Canola	nucleus	66.78	72.01
Bra036111.1-P	Field mustard	nucleus	66.44	71.64
KRH24415	Soybean	nucleus	68.34	71.04
AT3G05060.1	Thale cress	cytosol	65.4	70.92
AT5G27120.1	Thale cress	cytosol	65.22	70.73
CDY52494	Canola	nucleus	64.36	70.06
Bra020601.1-P	Field mustard	nucleus	58.48	69.26
CDY50583	Canola	cytosol, mitochondrion, nucleus, plastid	62.28	68.57
AT5G27140.2	Thale cress	cytosol	47.23	60.67
Zm00001d031027_P001	Maize	plastid	57.44	56.18
Zm00001d036776_P001	Maize	mitochondrion	57.09	53.66
TraesCS1A01G379300.1	Wheat	nucleus	37.02	39.05
TraesCS2A01G125500.1	Wheat	nucleus	36.33	38.96
TraesCS2A01G125400.1	Wheat	cytosol, plastid	29.76	37.07
TraesCS1A01G376100.1	Wheat	nucleus	15.92	18.97
TraesCS2A01G254400.1	Wheat	cytosol	1.56	7.26

Protein Annotations

EnsemblPlants:TraesCS4A01G141500.1	EnsemblPlantsGene:TraesCS4A01G141500	Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	InterPro:Helix_hairpin_bin_sf
InterPro:IPR002687	InterPro:IPR029012	InterPro:NOP5_N	InterPro:NOSIC	InterPro:Nop_dom	InterPro:Nop_dom_sf
PANTHER:PTHR10894	PANTHER:PTHR10894:SF1	PFAM:PF01798	PFAM:PF08156	PFscan:PS51358	SEG:seg
SMART:SM00931	SUPFAM:SSF89124	MapMan:17.1.1.2.1.5.3	:	:	:

Description

No Description!

Coordinates

chr4A:+:222105884..222109653

Molecular Weight (calculated)

63791.6 Da

IEP (calculated)

9.671

GRAVY (calculated)

-0.574

Length

578 amino acids

Sequence
(BLAST)

001: MLVLFETPAG FALFKVLNEG KLDKVEDLWK EFTTSDRARK VVELKAFNKF ENTSDALSAA TLIIDSKPTK GLRKFLQKHC DGETLAIADS KLGNAIKEKL
101: KIDCVHNSAV MELMTGLRNQ LSELISGLGT QDLGPMSLGL SHSLSRYKLK FSPEKVDTMI IQAIGLLDDL DKELNTYAMR VREWYGWHFP ELTKIVTDNI
201: QYAKVVKLMG NRTHAVNLDF SEILTDDEVE AQLKEAAVIS MGTEVNDLDL SNIRELCDQV LALSEYRAQL YDYLKSRMNT IAPNLTSLVG ELVGARLISH
301: GGSLVNLAKQ PGSTIQILGA EKALFRALKT KHATPKYGLI YHASLIGQAS KHKGKISRSL ASKAALAIRY DALGDGEDNS LGLESRLKLE TRLRVLEGKE
401: LGRSVGSTKG KPKIEVYEKD RKNGVGLITP AKTYNPSADL VLAQSTEETP KKLDVASKKR KHDDAETAPS TEPAGEAIQE DGGQEGRKKK KKKSKDVEES
501: PTVDAKSDKK KKKKSKETEE PGVATAEGEK KKKESEAQDE VVAMETESGK KDKRKKKKQA DGCAVPQRRR EAKPSHFA

Best Arabidopsis Sequence Match ( AT5G27120.1 )
(BLAST)

001: MLILFETPGG FAIFKVLNEG KLSNVEDLGN EFSTAKLARK MVKLVAFDKF DNTAEALEAV AKLLEGTPSK GLRKFLKANC VGETLAVADS KLGNIIKEKL
101: KIVCVHNNAV MELLRGIRSQ LTELISGLGD QDLGPMSLGL SHSLARYKLK FSSDKVDTMI IQAIGLLDDL DKELNTYAMR VREWFGWHFP ELAKIVQDNI
201: LYAKAVKLMG NRINAAKLDF SEILADEIEA ELKEAAVISM GTEVSDLDLL HIRELCDQVL SLAEYRAQLY DYLKSRMNTI APNLTALVGE LVGARLISHG
301: GSLLNLAKQP GSTVQILGAE KALFRALKTK HATPKYGLIF HASVVGQAAP KNKGKISRSL AAKSVLAIRC DALGDSQDNT MGVENRLKLE ARLRTLEGKD
401: LGRLSGSAKG KPKIEVYDKD KKKGSGGLIT PAKTYNTAAD SLLQTPTVDS ENGVKEKKDK KKKKKADDEE EAKTEEPSKK KSNKKKTEAE PETAEEPAKK
501: EKKKKRKHEE EETEMPAKKK EKSEKKKKKK TEV

Arabidopsis Description

NOP5-1Probable nucleolar protein 5-1 [Source:UniProtKB/Swiss-Prot;Acc:O04658]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.