Factsheet for Zm00001d047481_P003

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, secretory
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038818_P001	Maize	cytosol	51.25	99.65
Zm00001d034259_P001	Maize	cytosol	25.44	97.28
KXG39385	Sorghum	cytosol	95.91	94.73
Zm00001d029144_P004	Maize	cytosol	94.66	94.33
Zm00001d007484_P001	Maize	cytosol	57.12	93.59
Zm00001d011996_P002	Maize	cytosol	48.93	89.0
Os03t0350300-01	Rice	nucleus	89.15	88.2
Os03t0350100-02	Rice	nucleus	88.79	87.85
HORVU4Hr1G041810.4	Barley	cytosol	82.21	85.08
TraesCS2D01G120400.1	Wheat	nucleus	83.27	83.57
TraesCS1B01G379200.1	Wheat	cytosol	82.92	83.21
TraesCS4A01G141500.1	Wheat	nucleus	84.52	82.18
TraesCS2B01G139100.1	Wheat	endoplasmic reticulum, plastid	83.99	77.76
Solyc05g055880.2.1	Tomato	nucleus	70.11	76.8
GSMUA_Achr8P09940_001	Banana	cytosol	79.18	75.68
GSMUA_Achr11P...	Banana	cytosol	78.65	75.56
PGSC0003DMT400060016	Potato	cytosol	71.17	73.94
PGSC0003DMT400015638	Potato	cytosol	71.89	73.72
VIT_14s0030g01270.t01	Wine grape	nucleus	74.91	73.47
Solyc09g083080.2.1	Tomato	nucleus	71.89	73.19
KRH29399	Soybean	nucleus	71.17	72.6
KRH24415	Soybean	nucleus	71.35	72.12
CDX80674	Canola	cytosol	68.51	71.83
AT3G05060.1	Thale cress	cytosol	67.79	71.48
CDY19706	Canola	nucleus	67.97	71.4
CDY00004	Canola	nucleus	67.79	71.08
CDX86179	Canola	nucleus	67.79	70.95
Bra009978.1-P	Field mustard	nucleus	67.79	70.95
Bra036111.1-P	Field mustard	nucleus	67.62	70.9
AT5G27120.1	Thale cress	cytosol	66.73	70.36
CDY52494	Canola	nucleus	66.01	69.87
Bra020601.1-P	Field mustard	nucleus	60.5	69.67
CDY50583	Canola	cytosol, mitochondrion, nucleus, plastid	63.88	68.38
Zm00001d031027_P001	Maize	plastid	63.7	60.58
AT5G27140.2	Thale cress	cytosol	48.4	60.44
Zm00001d036776_P001	Maize	mitochondrion	63.17	57.72
Zm00001d029174_P005	Maize	nucleus	39.86	40.8
Zm00001d047472_P002	Maize	plastid	40.04	39.54
Zm00001d002716_P002	Maize	nucleus	16.9	19.59

Protein Annotations

Gene3D:1.10.150.460	Gene3D:1.10.246.90	Gene3D:1.10.287.660	EntrezGene:103639139	MapMan:17.1.1.2.1.5.3	ProteinID:AQL06674.1
InterPro:Helix_hairpin_bin_sf	InterPro:IPR002687	InterPro:IPR029012	UniProt:K7VLV6	InterPro:NOP5_N	InterPro:NOSIC
InterPro:Nop_dom	InterPro:Nop_dom_sf	PFAM:PF01798	PFAM:PF08156	PFscan:PS51358	PANTHER:PTHR10894
PANTHER:PTHR10894:SF1	SMART:SM00931	SUPFAM:SSF89124	UniParc:UPI0002216F3C	EnsemblPlantsGene:Zm00001d047481	EnsemblPlants:Zm00001d047481_P003
EnsemblPlants:Zm00001d047481_T003	SEG:seg	:	:	:	:

Description

Probable nucleolar protein 5-1

Coordinates

chr9:+:131630332..131634860

Molecular Weight (calculated)

62134.8 Da

IEP (calculated)

9.456

GRAVY (calculated)

-0.582

Length

562 amino acids

Sequence
(BLAST)

001: MLVLFETPAG FALFKVLDEG KLDKVEDLWK EFTTSDSARK VVELKAFNKF ENTSDALSAA TLIIDSKPSK GLRKFLQKHC EGETLAVADS KLGNAIKEKL
101: KIDCLHNSAV MELMRGLRNQ LTELITGLGA QDLGPMSLGL SHSLSRYKLK FSPEKVDTMI IQAIGLLDDL DKELNTYAMR VREWYGWHFP ELTKIVTDNI
201: QYAKVVKMMG NRVNAVNLDF SEILSDEELE TQLKEAAVIS MGTEVSDLDL SNIRELCDQV LALSEYRAQL YDYLRSRMNT IAPNLTALVG ELVGARLIAH
301: GGSLLNLAKQ PGSTIQILGA EKALFRALKT KHSTPKYGLI YHASLIGKAS QKHKGKISRS LAAKTALAIR YDALGDGEDN SIGTESRLKL ETRLQVLEGR
401: ELGKSAGSTK GKPKIEVYEK DRKKGTGALT TPAKTYNPAA DLVLTEETPK KSELASKKRK HNEVETEPLA EPAEEAIQED GDQEDRKKKK KKNKESKEAP
501: AGEGDGEKKK KKKSKEVEEE PVVAAASEVK KKKKKSDADG EDVAMQTEES GKKEKKKKKK AC

Best Arabidopsis Sequence Match ( AT3G05060.1 )
(BLAST)

001: MVLVLYETAA GFALFKVKDE GKMANVEDLC KEFDTPDSAR KMVKLKAFEK FDNTSEALEA VAKLLEGAPS KGLRKFLKAN CQGETLAVAD SKLGNVIKEK
101: LKIDCIHNNA VMELLRGVRS QFTELISGLG DQDLAPMSLG LSHSLARYKL KFSSDKVDTM IIQAIGLLDD LDKELNTYAM RVREWYGWHF PELAKIISDN
201: ILYAKSVKLM GNRVNAAKLD FSEILADEIE ADLKDAAVIS MGTEVSDLDL LHIRELCDQV LSLSEYRAQL YDYLKSRMNT IAPNLTALVG ELVGARLISH
301: GGSLLNLSKQ PGSTVQILGA EKALFRALKT KHATPKYGLI FHASLVGQAA PKHKGKISRS LAAKTVLAIR VDALGDSQDN TMGLENRAKL EARLRNLEGK
401: DLGRLSGSSK GKPKIEVYNK DKKMGSGGLI TPAKTYNTAA DSLLGETSAK SEEPSKKKDK KKKKKVEEEK PEEEEPSEKK KKKKAEAETE AVVEVAKEEK
501: KKNKKKRKHE EEETTETPAK KKDKKEKKKK SKD

Arabidopsis Description

NOP5-2Probable nucleolar protein 5-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.